RNA id: XR_005636828.1


Basic Information

Item Value
RNA id XR_005636828.1
length 2967
RNA type transcript
GC content 0.47
exon number 20
gene id abcd4
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18778130 ~ 18790373 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTACCTACTAAAACATCCACCTTACCAGTGAGTGCATTGTGAAGTACAAGCTAAACAAGGTAATGGTCTGTGAGACGATGCTAAAGTAAGGCAACAGTTAGCTAAGCTAATTAATGCAGCCGCGATAAGTACGAAGGGGggagtttttaattgttttgtagAAATGTGTTTGTTATTCCCCGTTGTAAGTTAACCGTTTTTCTCTTTAGCTGCTTTAACATTCGCTGTtgttaacgttaacattagtCTAAAGTTAGCTTGACCTGCTGCTTAATATTCGCTTTTCGTGACATCAATTCCGAAAaacgtagctaacgttatgggAAGTTTTATTTGCTAAAAATAATAGTCTCCTGCCGCCAGTACAGATGCCTCGTTTGGAAAAGTCAAATGGCAGAGGGACAAAAAGACTAAAGCTAGACTGGAAGTTTGTTCAGAGGTTCTGCAGCATCCAGAAGGTCCTGTTCCCATCATGGACCAGTCAAAGTGCTCTGATGTTTGGGACGCTGCTTGCTGTCACTCTGACAGAGCAGCTGATCATTTACCAAGTGGGTGTCCTCCCTAGCCACTTCTACAATGTGCTGGCAGACACAGATTACCCAGGCTTCAGGAGTCTGGTGGGCACAGCTATGGTGCTCATCTTGCTCAACTCCACATTGAAAAGTATCGACCAGTACATTTGCAATCAGATGTATGTAAGCTGGAGGAGGACGCTAACTGAGAGCCTTCATGCGTCCTACTTCCAGGGCCGAGTCTATTACACGCTCAATGTACTCAAAGAGGATATAGACAACCCAGACCAGCGAATCAGTCAGGACGCAGAGAGGTTGTGTAAGCAGATGAGCACCATGGCTAGTCGTTTGATTGTATCACCATTCACACTGGCTTACTACACCTACCACTGCTTTCATAGCACTGGTTGGATCGGTCCTGTAAGTATCTTTGGCTACTTTGTTTTTGGGACCATTGCCAATAAAATCCTCATGGGGCCGATTGTGTCTACTCTGTTTGAGCAAGAAAAACTGGAGGGAGACTTCAGATTCAAGCACATGCAGATCCGTGTCAATGCAGAGTCTGCAGCTTTTTACAGAGCCGGTAAAGTGGAGCACATGAGGACCAACCGCAGACTGCAGGCTCTGCTACAAACTCAGAAGAGTCTAATAAACAAAGAGCTCTGGCTTTACATTGGGGTAAACACCTTTGACTACGTTGGAGGTTTCCTTAGCTACATTATAATTGCCATTCCCATCTTTACTGGTATCTATGATGGTCTCACTCCTGGTGAGCTCAGTGCACTCATCAGTAAGAACGCCTTTGTGTGCATCTACTTGATAAATGGCTTCACGCAGCTAATAGACCTGTCAACCACTCTGTCAGATGTGGCTGGATACACCCACAGgaTTGGGGAGCTGAGGGAGGTGATGGATGACATCCTACGTGAGCAGTGTGACTATGACCCGGCATCAGGGGAAAGCTACGACTTTGACAGTGACTTCAACGTCCACGCAGGCCCTGTGGACACTGCCTTCATCCTGGACCATCTTTCATACAAATCTCCTTACTCAGATGAGCTGCTGGTGGAGGATTTGAGTCTGAAAATCAGCCAGGGAACACATCTACTGGTGGTGGGGAACACAGGAACCGGCAAGACGTCACTACTGAGGGTCCTCAACCGACTCTGGGAGGCACACAGCGGTTTTGTCCAGATGACCACATGTTTCGGGCCCAGAGGAACCCTCTTTCTGCCACAGAAACCTTACCTGACTGATGGCACACTGCGTGAACAGGTGATCTACCCACTGAAGGATATTTACCCTGCATCAGGGTCAGTGGACGATGACAGAATTATACAATTCCTGGAACTAGCAGGAGTGTCCAGTCTCCTAAAGCGGACAGGTGGGCTGGATGAAAAGGTGGACTGGAGCTGGTATGATGTTCTGTCTCCAGGTGAAATGCAGCGTCTCTCCTTTGCACGACTCTTCTACCTGCAGCCCAAATATGCAGTGTTGGATGAGGCCACCAGTGCTCTGACGGAGGAGGCAGAAGCACAGCTGTACAGAACCTGTAAACAGCTCGGCATGACTTTGGTCACTCTGGGACACCGCAGTAGCCTGGAGAAGTACCATGACGTCCAGTTgaaactgtgtggaggaggccTGTGGGAGTTGACCAAGTTAAAAGGTGGAAGTGGGAGTCTCAGAGAAGAAGCCACATGACTGGAGAGTCATCTCTTTGAAATCCTGGACATGCATGGCGCATCAGTGTGGGAGACAAGGATAGAAAACACTGAATTCCTCAGTTAGTAACACTCAAGTGCTCCTTCAACAAGAGCTCACGGTGGCCTTGGATGATCTCTTCAACTGCTGCAGGATCATCCAGCGTGCTGAGGTCACCCAACCCGTCCAAGTCTTGCTCCACCACTTTCCGCAGCACCCGGCGCATTATCTTACCTGAGCGGGTCTTCGGCAGCCGATGGACGAACTGTGAGAATGACATAATGTGACTAAGTAAAATTTAGTCTAAAATGTCTCTTTGCAATTTAAAGTCAGTGAGACAGAATTACCTGGATGAAGTCTGGACAGGCGTACTTGGCGATCTTTTTCAATACCATGTTGTTTAGCTGCCGAGACAGTTCCTCCTCTTGAATCTTCACACCCTTTTTTAGCACCACGAAGGCATACACACCTGAGGACACAGACAAGTCTTTACTATGATGGGCATTCTAAGTGGGAAACATCTTTTGACTCTTAACACTGGAAAAAGGTTTCTTGCTAACCTTGTCCTTTGATGTTATGTGGGTATCCTATGATAGCAGACTCAGCCACTGCAGGGTATTGATTCTGTTACGGAAATCACATTCAGGATCATCTGAAATATGTAACTGCTAAAAACCATAAATGTCTCTTTGGTTAAACATTGGAGAAAGTACCTAAATTGGCACTTTTAATGAAACTGAGAATACTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251213 lncRNA downstream 45320 18726872 ~ 18732810 (-) True G185479
TU251160 lncRNA downstream 79902 18695681 ~ 18698228 (-) True G185438
TU251193 lncRNA downstream 83334 18694554 ~ 18694796 (-) True G185467
TU251181 lncRNA downstream 132958 18644376 ~ 18645172 (-) False LOC120546357
TU251180 lncRNA downstream 135172 18640421 ~ 18642958 (-) True LOC120546357
TU251322 lncRNA upstream 115264 18904679 ~ 18907165 (-) False LOC120546223
TU251313 lncRNA upstream 124398 18913813 ~ 18914471 (-) True G185556
TU251334 lncRNA upstream 138910 18928325 ~ 18977441 (-) True G185565
TU251400 lncRNA upstream 320094 19109509 ~ 19110183 (-) True G185619
XR_005636902.1 lncRNA upstream 400821 19190236 ~ 19203995 (-) True LOC120546625
XM_039781661.1 mRNA downstream 87174 18687807 ~ 18690956 (-) True LOC120546603
XM_039781663.1 mRNA downstream 97596 18668961 ~ 18680534 (-) True LOC120546605
XM_039781659.1 mRNA downstream 110411 18658909 ~ 18667719 (-) True LOC120546602
XM_039781660.1 mRNA downstream 110411 18660548 ~ 18667719 (-) False LOC120546602
XM_039781658.1 mRNA downstream 110411 18660548 ~ 18667719 (-) False LOC120546602
XM_039781856.1 mRNA upstream 29666 18819081 ~ 18840766 (-) True LOC120546718
XM_039781857.1 mRNA upstream 30929 18820344 ~ 18869609 (-) False LOC120546718
XM_039781854.1 mRNA upstream 30929 18820344 ~ 18869609 (-) False LOC120546718
XM_039781855.1 mRNA upstream 30929 18820344 ~ 18854420 (-) False LOC120546718
XM_039781694.1 mRNA upstream 84319 18873734 ~ 18898311 (-) True LOC120546626
TU251114 other downstream 271942 18493308 ~ 18506188 (-) False LOC120546829
TU251109 other downstream 285272 18489816 ~ 18492858 (-) False LOC120546829
XR_005637051.1 other downstream 709517 18068498 ~ 18068613 (-) True LOC120547347
TU250885 other downstream 865094 17911270 ~ 17913036 (-) True G185233
TU250856 other downstream 1011490 17764805 ~ 17766640 (-) False zgc:153284
TU251888 other upstream 1773022 20562437 ~ 20567479 (-) True G186006
unassigned_transcript_1082 other upstream 2088449 20877864 ~ 20877946 (-) True trnal-uaa_20
XR_005636822.1 other upstream 2224249 21013664 ~ 21143973 (-) False syne1a
XR_005636821.1 other upstream 2224249 21013664 ~ 21143973 (-) False syne1a
XR_005637050.1 other upstream 2383426 21172841 ~ 21173006 (-) True LOC120547346

Expression Profile