RNA id: XM_039780998.1


Basic Information

Item Value
RNA id XM_039780998.1
length 2293
RNA type mRNA
GC content 0.47
exon number 11
gene id pla2g7
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10693839 ~ 10708837 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTCCCATGCTAATAGTGGCTCGGCACACCAACACTGTCACTAACACACCTAACTCAAACCACTCCCAAGTGACAAATACCGGTGCATTTATCTAAGAAATTCAAATTATGTTACGTGGTAATGTTGCGAAACTAATGTAGTAACATTGGTACCTAACAACTTCCGTATCTCCGGTAGGTCTCGTCTTTTGTGAAATAGTTACAGGTTTTTGTGGCAAACAGCTAACGTCGGTTTAACAGAATATTTCGCTTTTGAACTGAGGTCGATGTTGTCTCATGGAGGATTTGTACAGTTATTAACCTTCGTCAAGAGTACTTGGGCAAGGGCAGACCAGAGGAGGTACACGCTCGGTTTCTTCGCCATGGGGAACTCCTGCAGTAATCATCTTGGGATCCCTCCAGCCAAGGGCCCTAATGCTGTGGGCTGCACCGACTTCATGATGGACCACACTGCACAGGGCAGCTTCTTCCGGCTTTACTATCCTTGTCAAACGACTGAGAAAGCACAACGACCAGACTGGGTACCGTGCAAGGAGTATTTTAACGGTCTAACGGACTTCATGAACATCAACAGGACTGTCGGTGAAAAGATTTTCAACTACCTCTTTGGGTCCTTCAAGATTCCAGCCTCCTTGGATGCTCCGTTTAAATCAAATGTCAAATGTCCTGTAGTCATCTTCTCCCATGGCCTTGGAGCTTTTAGGACTTTGTATTCAGCCATATGTGCAGAATTGGCCTCGCAGGGCTTCATTGTGGCGTCCGTGGAACACAGaGACCAGTCGGCCTCAGCCACGTATTATTTCCGTGACAAGACCGAGTCCGAGAAGGCAAACAAGAAGAATGTGCCTAAAACATCTGGCTCGGCTCAGGAAGACAACTTGGTAAGAGAGTGGATGTACTACAGGGGTCTGAAgcacggagagagagagttcCCCCTCCGAAACGAACAGGTGAAGAAGAGAGCAGACGAATGCATTCTGGCTCTGGACAGACTCACCGAAATCAACTCAGGGACACCGGTGCAAAATGTTTTGCAAACGCAGTTTGACTGGACGACGTTGGAGAACTCCATGGATCTGTGTCGGATAGCGGTGATGGGGCATTCCTTCGGCGGAGCAACCGTGATTGAAGCTCTGTGCAAAGAGGTTAAATTTAAGTGTGGCGTAGCGCTGGACGCCTGGATGAACCCTCTAGACGACGAGATCTTTCCCCGGGTCAAACAGCCGATCTTCTTCATCAACTCGGAGAAGTTTCAGTGGGCGGGGAACATCAGCCGCATGAAGAAGCTGGATTCAGCCGTCATCCAGAGGAAAATGATCACCATCAGAGGCACAGTCCACCAGAGTTTCCCAGACTTCACCTTCCTCACGGGCAACTGGATCGGCAAGCTGATGAAGCTGAAGGGAGAGATCGACCCGGAGCTCGCCATAGATCTCTGCAACAAAGCAACACTAGCTTTCCTGCAACGCCATCTCGGTCTAGAGAAGAACTTTAACCAGTGGGACCCTCTGATTGACGGCCAAGACGATCACCTCATTCAGGGAACTAACGTCACTTTGCTGCAGTCTGCCATCTGAACCGCGTCATGTCCCTGCACAATGCAGCCGGGACTGCCTCCTGCGTGGGAGTCAGCGCAACGCTCCCTAAAATGTCAAGCCGGGCCTACTTGGCATTTCAAAAACGGACTAAGGATAACATTTTTGGAGTAGTAATAACTAGAGAAGATCTTCTCTAAGTCATCAGCAGGAAAGATTTGTTTTCCTTGACAGATCACGAGGCCTGAATGTCGCTGAACACTTCTGTTCACTGTTCTTTACTTAGTAGCAATTTCTTCGAGAAATTGCTGCATCATTTTTCAGCTATGAGTGTATATGATCATCATGTTATTTCACACAAATATTGTACGTCTCCGAGGCTGTTGTGACCTTCCGAAAGAGACTAGCTATACTATGATTACAGTTTGATTATGGAACAAGACCTATAATGAGAAACGTATCCAACCAGTGAATTGGGGATGGGCATTgttaaaggaaaaagaaaaaaaaaataatgaatgtgattgaATATGATCTGATATGAATTATTGATCGATTCAACAGAGAGCGGCTACACAAGTAAACCAGCATCATTAAAAGCTTACAAACACTAAAAGGTTGCATCGTGGCAAAATGTGCCGTAAACCGAGTACTGCTTGCCCTGGGTCAGCGTCAGACCTCCACTACTTTTCTACACCTACTGTCTGAAATATCTGCCATTACAGAAATTCCAATAAATCTGGTTTGTATTcaaaaa

Function

GO:

id name namespace
GO:0016042 lipid catabolic process biological_process
GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity molecular_function

KEGG:

id description
K01062 PLA2G7, PAFAH; platelet-activating factor acetylhydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248541 lncRNA downstream 102501 10591080 ~ 10591338 (-) True G183534
TU248538 lncRNA downstream 127675 10565916 ~ 10566164 (-) True G183531
TU248537 lncRNA downstream 135720 10557487 ~ 10558119 (-) True G183530
TU248503 lncRNA downstream 460271 10220918 ~ 10233568 (-) True G183497
TU248497 lncRNA downstream 476713 10216351 ~ 10217126 (-) True G183492
TU248626 lncRNA upstream 46159 10754996 ~ 10780282 (-) True G183594
TU248658 lncRNA upstream 238979 10947816 ~ 10948114 (-) True G183616
TU248663 lncRNA upstream 254995 10963832 ~ 10964049 (-) True G183621
TU248683 lncRNA upstream 480817 11189654 ~ 11210793 (-) True G183639
TU248701 lncRNA upstream 738138 11446975 ~ 11447319 (-) True G183656
XM_039782864.1 mRNA downstream 27539 10662117 ~ 10666300 (-) True sf3b6
XM_039781966.1 mRNA downstream 83214 10455244 ~ 10610625 (-) False LOC120546776
XM_039781967.1 mRNA downstream 83214 10501920 ~ 10610625 (-) False LOC120546776
XM_039781965.1 mRNA downstream 83214 10602470 ~ 10610625 (-) True LOC120546776
XM_039782069.1 mRNA downstream 244429 10398802 ~ 10449410 (-) False fam49a
XM_039781001.1 mRNA upstream 15633 10724470 ~ 10728525 (-) True glrx5
XM_039782719.1 mRNA upstream 837349 11546186 ~ 11548350 (-) True LOC120547228
XM_039781328.1 mRNA upstream 866636 11575473 ~ 11576057 (-) True LOC120546403
XM_039781838.1 mRNA upstream 910867 11619704 ~ 11634330 (-) True LOC120546716
XM_039782501.1 mRNA upstream 930009 11638846 ~ 11650060 (-) True LOC120547092
XR_005636937.1 other downstream 83214 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other downstream 172429 10520717 ~ 10521410 (-) True G183528
TU248390 other downstream 592778 10099603 ~ 10101061 (-) False LOC120546281
TU248116 other downstream 1560367 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 1906622 8783788 ~ 8787217 (-) False LOC120546397
TU248695 other upstream 665271 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 1874332 12583169 ~ 12583241 (-) True trnat-ugu_2
TU249125 other upstream 2251661 12960498 ~ 13007868 (-) True LOC120547209
TU249198 other upstream 2485240 13194077 ~ 13215824 (-) False hmgn3
TU249194 other upstream 2497470 13206307 ~ 13215824 (-) False hmgn3

Expression Profile