RNA id: XM_039781021.1


Basic Information

Item Value
RNA id XM_039781021.1
length 2425
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC120546235
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 8961680 ~ 8991368 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGCATAAGAGAAACAGGTTTGTGTCTGGATAACGACATGGGCTCTGGAGACAGTTGGAGAAAAATCGCTGCGCTTATTGGAGTCTTTGTGGTTTTGAAGGTGCAAGCTGTTCCAACACATATCGGTGATAATGCAGATGCTGGTGAACTGAGTGACGACATACTTGACATCAATAGAGGGTTAACACACCTGTTTGAAGGAGACATCGCTGTTGATCCCAGCAGGAATGCAATCCTTGATAAAACAAGAAGATGGAAGTTCCCCATCCCCTATATCTTAAGCGATTCTTTAGAACTGAATGCTAAAGGTGTGATCCTCCAGGCTTTTGAGGAATACCGTTTGAGATCCTGTGTGGACTTCAAGCCCTATGAGGGCGAGAGCAGCTACATCTCCTTCACCAAGCTGTCTGGATGCTGGTCATATGTTGGAGATAATGGAACAGGCAGGAATGTGTCCATTGGAGCCAGATGTGACACTAAGGCTATTGTGCAGCATGAGCTCCTCCATGCTCTGGGCTTTTACCATGAACAGTCTCGCTCAGATAGAGACGACTATGTCAAAATCTGGTGGGACCAGATTGAAGAAGGGAAGGAACACAGTTTCAAGAAGTATGAGGATGACTTTATCACTGATCTGAACACGCCATATGACTATGAGTCCATCATGCACTACAGACCACTGTCCTTTAACAAGAACGAAAGCATCCCCACAATCACCACCAACATACCGTATTTTAATGAGGTCATCGGCCAGCGGCTGGACTTCAGTGCAGTAGACATCACAAGGCTCAACCGCATGTACGACTGTGccaacacacacactctcctggACCAGTGCTCCTTTGAGCTGATCAACATCTGTGGAATGATCCAGAATGAGGAGGACACCGCAGACTGGGCCCAGACGCTGAGCAGTCCAGCTGATACCGACCACACCCtggcagggcactgcagagATTCTGGCTACTTCATGAAGTTTGACACATCTTCGGGCGCAGCTGGAAGCAGCGCCTTGCTGGAGTCACGTATCCTCTACCCCAAGAGAGACGAGCAGTGCCTGGAGTTCTTCTACAAGATGACGGGAGCCGCTGGGGACAAACTGGTCATATGGGTCAGGACTGATGATGGGACAGGGGCTCTACGCAGTTTCAAGAAGATCCACACCATTACAGGTAATGGAGATGCTGCCTGGAAAATAGCCCATGTAACTCTCAAGGTGACAGAGAAGTTCCGCTATTCCTTCCAAGGCATCAGAGGATCAGCAGACTCCTCAGGCGCCATCTTAATCGATGACATCACTCTTACTGAGACCATTTGCCCCAGTGCTGTCTGGCAAATCCACAACTTCAACCATGTTCTCGCCACCACTCCTAATGGCAGTGCAGTTAAAAGCAAGTGCTTCTACAACTCGGAGGGCTACTCATTCGGTGTCAGTGTTTACCCAAATGGACAACACAGCGCCTACCCAGACTATGTTGGTATGAACTTGCACCTCTGCAGTGGGGAAAACGATACAGTGATGCAATGGCCCGCCAAAAACAGGCAGGCAACCATTGTTGCCATGGACCAGGACCCTGATGTAAAACTGAGAATGTCTTCTACAAGAAGCTTCACTACAGAGACTGACGCCCGCTGGAACAAACCAACAGCGGCTTCGGGAGCGGTGTGGGATGACAGCTGCCAGTGCCACCGCGGTAAAGACTTTGGCTGGAGTACATTCATTTCTCACAAGCAATTGCACAGGAGGAGTTTCCTCAAGAACGATGACCTCATCATCACTGCTGAATTTAATGATTTGACCCACCTGATCGAAGCACGTGCTTGTCATCCCAACCCTTGTTTTAACGGAGgcgtgtgtgtggaaagtgaaGGGAGAGCCTCATGCagGTGTGCATCAAGCCTGGTCACCTACTACACTGGTAAAAGGTGTGAGAAACTGAACATAAAAAaaggcattctgggagcgcTGATTTGCGGCGCAGCAGGAATCGTAGTCCTGACACTGGCCATCTTCAGCATCATCAGGAGAGCTCAGTGAAACACATTTCTGAGAAATATGTGAATATGTGTCTTCTGTATTCATTCAGCAGTGAAAGCACAGCATACAGTGCCAACACTGGAGAGAGAAGTATTAGTATCAGTTTATAGGCTTATTTATGGACACTAAACCCTGGGCCTATATCTGTTGTGCGCCcacatgaaataattaaatgttttcCTCCTTAGACTATGGCTAGAAATCAAGCCCCAACAACTAAAGCAAACATTTCAACTGTcaaattttaacattttgcagGAGAGCAGCAGTTTTGTGTCTTaagtttgtttgatgtgtataATAAAGATAATCTTATTAGTCCACTAAAAGTTATGAAAAATGTATAGTTTGGATTGAAAATTCTGAGTCATGCATAGTGTAATGaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247969 lncRNA downstream 190095 8771288 ~ 8771585 (-) True G183068
TU247940 lncRNA downstream 482334 8478912 ~ 8479346 (-) True G183042
TU247873 lncRNA downstream 530006 8431362 ~ 8431674 (-) True G183027
TU247857 lncRNA downstream 715915 8245565 ~ 8245765 (-) True G183013
TU247850 lncRNA downstream 770206 8191178 ~ 8191474 (-) True G183006
TU248059 lncRNA upstream 7207 8998575 ~ 8998828 (-) True G183136
TU248075 lncRNA upstream 29611 9020979 ~ 9024565 (-) False LOC120546609
XR_005636853.1 lncRNA upstream 107003 9098371 ~ 9099326 (-) True LOC120546288
TU248114 lncRNA upstream 135353 9126721 ~ 9129230 (-) True G183175
TU248119 lncRNA upstream 142168 9133536 ~ 9134536 (-) True G183177
XM_039781110.1 mRNA downstream 11277 8935924 ~ 8950403 (-) False mep1a.1
XM_039781109.1 mRNA downstream 11277 8935924 ~ 8950403 (-) True mep1a.1
XM_039782894.1 mRNA downstream 30187 8917513 ~ 8931493 (-) True LOC120547332
XM_039781322.1 mRNA downstream 170979 8789832 ~ 8790701 (-) True LOC120546398
XM_039781321.1 mRNA downstream 174462 8781328 ~ 8787218 (-) True LOC120546397
XM_039780981.1 mRNA upstream 7524 8998892 ~ 9000320 (-) True LOC120546203
XM_039781669.1 mRNA upstream 11901 9003269 ~ 9020428 (-) True brox
XM_039781670.1 mRNA upstream 11901 9003269 ~ 9020419 (-) False brox
XM_039781668.1 mRNA upstream 29592 9020960 ~ 9024116 (-) True LOC120546609
XM_039781916.1 mRNA upstream 163656 9155024 ~ 9288203 (-) False disp1
TU247995 other downstream 174463 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 936636 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 1195294 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 1928278 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 1929957 7031647 ~ 7031723 (-) True trnak-uuu_20
TU248116 other upstream 138205 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 1108235 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 1510552 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 1529349 10520717 ~ 10521410 (-) True G183528
TU248695 other upstream 2382740 11374108 ~ 11374615 (-) True G183650

Expression Profile