RNA id: XM_039781048.1


Basic Information

Item Value
RNA id XM_039781048.1
length 3692
RNA type mRNA
GC content 0.43
exon number 17
gene id arhgap18
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15808083 ~ 15830786 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGAGCCGGCAACAGCAGCAGTCCCAGGGAGTGGTTTTAACGGGTTACCACAGCAACGCGGAACTGTTGCCGAAAACTGGACCGTGTGACCCCAGCTGTCCGTCAGCCCAGGACCTCGAGTCCACTGTGATCAGGAATCTCTGGACGAGCTTGAGATGGACGACTATTGGAAGGAGGTGGAGAACATCACTCGctcaggaggaggagcagggagGGGAGAAGGTGGAGGAGAAGGGGAAGTGcaagaggaggagcagcagaaaATTCCTGAGGAAGGCGAACAGGAGGAGGCTTGGCTTACAGAGGCGGGGCTAGCACGGCTGTTTGATGATTCCCTAGCAGCTGACCAGGATCAGgAAGAAGACAGCGCAGTGTTCCTGTCCACATTGACCAGATCTCAGGCGGCAGCTGTAGAACGTCGTGTGACATCACTACAGCAGACATGGCTACGGCGACGCAACCGGCAACACGTTCCCGATGTCAGGGATATATTCAGACCTCCTGAAAAGGATGGCGAGCCTAGTAAACTCAAAGGGGGAAGTGAGAATGGACAAAAAGATGTCCCTTCAGTTGcagaaacagagacagaactGAACGTTGAAGTGGCGTTTTCAGAGCAGGCGCTCACTTACAGGGACAACAACCAAAAGTTAAACGTCATCGCTAGCCCTAACTCACCTGACGACAAATTACCAAACTTTAAGCTGCTCCGAGATAAAACGGGTCAGACCAGAATAGGAGATCTGTCTCCTCTGGATATGAAAAAGGTGCGTAGACTGGTGCTTGTTGAGTCGACTGCTCTGTTTGACACCGCTGGGATAGACCTGAAAGCGCACAAAGCTGTCAAAGTTAAGACTAAAGaaagtGGTCTATTTGGTGTTCCCCTTGCCACTTTATTGGAACAGGACCAGAGGCGGACCCCTGGGACCAAAGTGCCATTCATACTGCAGAGGTTTATTAGtcatattgaggaggagggattAGACACCGAGGGGCTACTGCGGATCCCTGGGGCAGCCACCAGAGTCAAGTCCCTGTGCCAGGAGCTTGAGTCCTCTTTCTATGACGGGatgtttccatggcaacagttGAAGCAGCACGATGCTGCTAGCCTTTTGAAGCTGTTCATCAGGGAGTTACCCCATCCACTGCTGACTGTGGAGTACCTCAACGCATTTATTGCTGTCAACAAGCTCCCCACAAAGAAGCAGCAGTTGCAGGCTTTGAACCTGTTGGTCCTTCTGTTACCTACGGCCAATCGGGACACTTTGAAGGCACTAGTGGAGTTTTTCCAGCGTGTGATTGACCACCAGGCCAAGAATAAAATGACTCTTAACAATGTCTCTGTTGTCATGGCACCCAACATCTTCATGTTCAAAGGTTTCCGCTCCAAGGTTACAGAACAACAGGAGTTCTCCATGGCAACTAGCACAGCAAACATTGTCCGGCTGCTGATCCGATACCAGAATCTTCTGTGGACGATCCCCAAGTTCATTATGACCCAGGTCAGACAACAAAACATGGAAAGCCATCGGAAACCAAATAAAGAGAAGGCTGTGAGAAAGCTGCTGAAGAAGATTACCACTGAAAAATCTGATAAAGCTGTCTCTGAGGAGAGTTCACAGGGATTTATTCGAGTTCAAGCACCACAATTCAGTAAAGTGTCCATGGCAGTTCAGCTTACTGAAGAGTTGCAGGCTGCTGATGTATTAACACGCTTCCTCAGCCAAGAGAGTTTAGTGGCAGTGAAACGAGAAGAGCTGTGTCTCTATGAGATTGGTGGAAACATCGAGGAGAGATGTCTAGATGGGGAAACTTACATGAAAGACCTCTTCCAGCTGAACCCTGCAGCAGAATGGGTCATCAAAGCTGTGCAGCGATAAACTCGTTCCTACCATCATGCCCTGCTGGATAATGGACTGCTCCAAATGTTCCCCAATGTATGCTACTAAGAGCAGACTGCACCTGGATCTCTGTGGTTTCTGCTGGTTCTGAATGTACTCAGACTGTTTGCTTGTAGcaacttgttgttgttgttggtggtggTTGCATTGGTTTGCCCTGAAAACTGCCAAAAAATACAACTAGTCCAATGGCAGtttaaaaacatactgtatgaatcCCTTTTGGTTAAATCTGCGTTGCATTTTTTCCACTTAATTTAACAACCACATTGTCAgacaagaaaaaggaaaaatatgtGCTTGGATATTCCACAACACAGACTTTTTTCCACTCTGCCTTATACTAGATGTTGGAATTTTGGGCCTCAGTTACCATTAGCCTAAAGCATCCGACAGTTGAGCAGGTGAAATAAAACCACCTTGTCGTCTGTGGAGTCCTGACAGACCgcttttattttgtggttgaaaCACGTTTCTCCCAGCAATTAAGCCACAACATTGTGATTCTTAATAGTATGTGATACTCTAAGTATTGCAGTTGTATACTGTGATTTATTGCTACTAAtcactttgttgtgtcttcaGTAATACGCTGACATAATCTAGTTTGGggcaataaaatatcaaatcTAATTAAATCATGAATCAATTACATTAGCTCTAGTTTCTGTACAAATACTTTTAAGAAAAttggcttttattttatttttatttttttaaaagcccaaaAAGTAAATATGTGGTCACAAtattaaatgtgaatatatcAAAGCACTTGATTGTAACCAGAAAGGAATGAACATTGGAGTGAATGGGCATATAGGGGTTGAAAAGCTGGATGGGGACTTTAGAGACAGGAGAGGTGATGAAGTACTACTGTACTGTAAGTTATATGTGAGGGAGGGGCCCCTTATGTGGCACACCTCAATAGTGACCCCAAAACCTTTCATAATAATGTCGTCACTGACAGCTAACCGGAACATGCAATGATGACATCAATGTTTTTAGGGTACATTAATACTGCTGTACATTATAACATTTTAAACCGTTGATGTTTGAGTATGTTAACGTGTGATCCAGCTTCAAAAACTGCTACTCGCCAGTGtacaaatgtaaacaaacacatttttatatatgtactgtatatagtagcctatgtGTTTGCTCCCATGGAATTCATCAATTGTCTTACAAGTTTTGTACCAGATACTTAatcattttaaagatatttaatatgtatataCCAAAAATAAATGGCTGACTGTATAAATGGCCTTCAATGATACGCTGTCACATGATGGGttccaaaagtatgtggacactaATACTTTTGGCTTTTGCTGTTTTGATTTTTGTCTCTGTGCTTTTCACAGTCTGGATCAGTTGATATAGCACACTGAGGAAAgttttaatttaagtatttaaGTATTAATCCAGGAATAGAAAATCTCCATTTTATCTTTTTGGCACATAGCTGTGCTTCTGGTGGCTTTCAACACAAGCCTAATATGATTCTGTGTGGTTTCTTACAGTTTCAACAGCCTGTAGACGATTATTTTAGCACCACAAAGTCAAACATCATGGATATTACTCTTGTGGAAAGCTGTagaatacaaataatgtgtccCTGTTGGAAAATGTTATGAACTAAGTAACTCTCTGCCTTGTATTATCTTGTTTACTGTGAATGTTctgttttttcaaaaaatgaTGTCTTTGTCTTATTACCACCTCTGAAATGACCACTAAGCAGCCTGTAAATAAACATGCAGTTATTAATTACAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250065 lncRNA downstream 15271 15792286 ~ 15792812 (-) False si:dkey-177p2.18
TU250061 lncRNA downstream 32597 15772686 ~ 15775486 (-) True G184668
TU250055 lncRNA downstream 72801 15734418 ~ 15735282 (-) True G184662
XR_005636867.1 lncRNA downstream 107084 15696500 ~ 15700999 (-) True LOC120546341
TU249791 lncRNA downstream 519198 15283249 ~ 15288885 (-) True G184452
TU250107 lncRNA upstream 182919 16012500 ~ 16015535 (-) True G184696
TU250117 lncRNA upstream 195637 16025218 ~ 16033730 (-) True G184699
TU250122 lncRNA upstream 208169 16037750 ~ 16042215 (-) True G184702
TU250125 lncRNA upstream 235090 16064671 ~ 16064914 (-) True G184705
TU250126 lncRNA upstream 237177 16066758 ~ 16068271 (-) False LOC120546224
XM_039781273.1 mRNA downstream 1234 15795771 ~ 15806849 (-) True sel1l
XM_039781274.1 mRNA downstream 12445 15788826 ~ 15795638 (-) True si:dkey-177p2.18
XM_039781272.1 mRNA downstream 22477 15777423 ~ 15785606 (-) True chga
XM_039781078.1 mRNA downstream 84742 15720429 ~ 15723341 (-) True LOC120546258
XM_039781222.1 mRNA downstream 113462 15688518 ~ 15694621 (-) True wdr21
XM_039781049.1 mRNA upstream 2198 15831779 ~ 15839516 (-) True fkbp6
XM_039781052.1 mRNA upstream 11565 15841146 ~ 15919640 (-) True tmem244
XM_039781051.1 mRNA upstream 11565 15841146 ~ 15849192 (-) False tmem244
XM_039781056.1 mRNA upstream 92040 15921621 ~ 15980200 (-) False epb41l2
XM_039781066.1 mRNA upstream 92040 15921621 ~ 15978390 (-) False epb41l2
TU250064 other downstream 16525 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 1228914 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1309713 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2316955 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 2340018 13458616 ~ 13468065 (-) True fkbp1b
XR_005636881.1 other upstream 661069 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 1000215 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 1932375 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 1932817 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 1933152 17762733 ~ 17762808 (-) True LOC120547353

Expression Profile