RNA id: XM_039781056.1


Basic Information

Item Value
RNA id XM_039781056.1
length 7023
RNA type mRNA
GC content 0.46
exon number 25
gene id epb41l2
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15921621 ~ 15980200 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCAGCACAACCTTTTGTATCTGTGTAATGTTATTGCATTTCATGCAACTAAATCTGAGGAATACAACTGTAGCAGATGCagctcagaaaataaacatGTAGATGTGCCTTAAATGTAGatgtgtttaaagaaatgtctgaTTTTCTGCTCTCCATTCCTGCTCTCCATTCCTGTGTGTGCACACTCTACTGGCCTGCTGTGCTGCTCTGCTGGATCCATGCTACTCTACTAATGTTGACCtgtcaccatgacaacagaAGCAGGCTCTGAGACGGAGGTGAAGGAGAAAGCCGAGGAGTCAGCCGCTCAGCCGGACCAATCGGAGAAGGCAAAGGAAGAAACCCAGGAAGTACCCAACGCtgagggagaggagaaggagaaagagaaggagaaagagggaaaaggaaTAGCTCGATACCTGCCAACATGGCTTAAGAAGCAGAAGTCTCAGAGCCAGACGTCTCCGACCAAGGAGGTCCCACCCACAGAGGAAGCGGTTAGCAAGGTGACCCAGGAAGAGGACGGGCCTGCCCCAGAACTCAACGGTCacgcagaggaagaggaggaagggaaagaGGCAGTAAAGTCAGAGCAAGTGAAGGACAAAGAAGCAGAATCTCATTCCACCGCCAGCGCAGACACTGAGCCTGCCAAGGAGGAGAAGCTGGAAGAGAGCGCTGAGAAAGTTCCAGACGAGACCACGGGGAcaacagagggagagggggcagaggagcagaagaaggagaaagaaggagaggaggaggaggaggaaggaggaggaggaggaggtggaggaggagaagaaggccACACCTCAATTTTCCAGTCTCCTCTTCGTCTGGTGAGGAAGACCAAGATGAAGCTGATGGCGTGTCACGTGGCCCTCCTGGACGGGACCGACTTCAACTGCGAAGTGGAGAAACGTGCCAAGGGCCAGTACCTGTTCTTTAAGGTGTGTGAGCACCTTAACCTGATGGAGAAGGACTACTTTGGACTCTCGTACACAGACAGCCACGAACAGAAGTGTTGGTTGGATCCCACGAAGGAAATCAAGAGACAGATACGcagTAACAACTGGCAGTTTGTATTCAACGTCAAGTTCTACCCTCCTGACCCCTCACTGCTCACTGAAGACAtcaccagGTACCTGTTGTGTCTGCAGCTCCGTGAAGATGTGGCTTCGGGTCGACTGCCTTGCTCTTTTGTCACTCACGCTCTGCTGGGGTCATACACGTTGCAGGCTGAAGTTGGGGACTATGAACCCGACCAGCCTCGGCCTCTGGACAACGTCAGTCAGCTGACCTTTGCGCCCAATCAGAGCAAAGAGATGGAGGAGAAAATTCTTGAACTCCACAAGTCTCACAGGGGAATGACACCAGCACAGGCCGACGCACAGTTTCTAGAAAATGCCAAGAAACTGTCCATGTACGGGGTGGACCTGCACCATGCTAAGGACTCTGAGGGTGTGGACATCATGCTAGGTGTGTGCGCCAACGGACTCCTGGTTTACAAAGACAGGCTCCGGATAAATCGTTTCGCTTGGCCCAAAATACTCAAGATTTCATACAAGAGGAACAACTTCTACATTAAGATCAGGCCAGGAGAGACGGAGCAGTTTGAGAGCACGGTGGGATTCAAACTCCAGAATCATCGATCTGCCAAAAGGCTGTGGAAAGTCTGTGTGGAGAATCACAGTTTCTTCAGGTTAAATGCTCCAGAACCTCCCGCCAAGGCCCGCTTCTTGACTCTGGGCTCCAAGTTCCGTTACAGCGGGCGAACCCAGGCACAGACCCGCGTGGCCAGCTCCCTCATAGACCGACCTGCACCCAACTTTGAACGCACCTCATCCAAACGTATCAGCCGCAGTCTGGATGGAGCACCAGTGATCAACATAACTGAAGCCTCATCTGAGAACGGACGTGAGCCCCACCTGGAGCTCCACTCTGActctaagGTTAAGGAGGTGGACTTGAGCCCTAGTGATGCGGAAGCCACGCCCACCCAGTCACTTGGAGCCAGTGAGCTCGCCCTCTCTCAGGACCATGATAAGACCCAGGAAGACGTTCTGAAACACCAAGCTAGCATTAGCCAGCTAAAACGCTCCTTTATGGAGGCGccacctccctctcctcctcagcccaaCCAGTGGGAGAAACGTCTCACCTCCTCTCCCGCTACAACGATACGTATTCAACAGCAACAGCATGTGAGCCTTGAAGAGGAGATAGCTTCTGTACTTTTCAGTAGAGGCTCTGGCTTTTGTTCAGCCCTTTCTGCCTGCAGTATTCCTGATCCAACTCTAGATGCTGATATAACCACTTCTACTACTTCCACTGCTGTCTGCAGTAGCGCTGCTCTGCATGGGCTTCCTATTTCCCCAACTGCTCCACTCTCTGCCACCGAGGAGAGTGCGCCCCGAGCGGAAGCAGCTGCTGCCGATAACACGATGTCTGATACCAAAGAGCCTGCAAAGaCAACCGAAGTTGAAATTGAGGAAACCGTTGTCGTCCAAGAGGTTTCCATAGCACCCAAACCTGGGCTTGTCGCGGTTACGACCAGCTCCCCTGCTGGCCCGCCTGCAGAGCAGGAAACAAGAGAGCAGGAAGTGACAGTCGAAGAGGAAGTAGCGGTAGCGGAGGAAGCAAAAGTGTCGAAGCAGGAGAGCGTTTCATCTGAGAGCGAGAGTGAAGAGGAAGCGGAGTACCATCCAAATGTCTCCGTGTCCATCTGCCACACACAAATACcagaggagaaggaagaggaggaagagcaggaggaggaagcgGATGATAAGACGGCAGCGGAGCAGGGCATGTCGGCTCCAGACGCTCCTTCCCTTCCAGCAGAAGTCAGCCAAGCTGTGGAGGCAACCGGTCAAGAGGTAGAGGAGGACGCAGGGGCAGAGAAAAGGAAGAATgcggaggaggagaaagaagcTGAGAGGGAGATGGAGGAAAGCGCCGATGATCCAATGATGACACCTGAGGAAGCTCCTAACGGGCACGCCCTGCCTGAGGAGAGCGCCACCGGAATGGTCGCCCCtgcggaggaagaggaagagccTAAAATGAACGGAGAAGCCTCACTGGCTGAAGCAGAACCCCGGCCACAGGTTATTTGTTGCTCTGAGCCACCTGTGGTAAAGACAGAAATGGTGACTATATCAGACACGTTTGCAGCCCAGAAAACTGAGATAGCTACAAAAGAAGTGCCCATCGTACATACGGAAACCAAGACCATCACATACGAAGCCGCACAGTTGGATGGTAATGGCGATGGCGAGCCTGGAGTGTTGATGACCGCTCAGACAATCACCTCTGAATCTCTGTGTACTACTACAACCACACACATTACCAagATGTTAAAGGGCGGCCTATCTGAGACAAGGATCGAGAAACGCATCGTCATTACTGGTGACTGTGACATCGACCACGACCAGGCACTGGCCCAGGCCATTAAGGAGGCCAAAGAGCAACATCCTGACATGTCTGTTACCAGAGTGGTGGTTCATAAAGAAACTGAACTGGCTGAGGAGGAGGATTGACTGAACtcagAGTTGAAGGGCCCATCGTGACGGTTTTCTCTGTTGACGTCGAACGACCTCCATCACCCTACAACAACCAACCTTTACTGActgaagaggaagagaagaagagctGAAAAACAGAAGGCGAAAGAGGCTAGACAAACGGGGAGAAGTTGCCAATCTCTTCCCAGTCGGTCTTTCTTACATGTCTGTGATGCATCTAAATCCGTCACTCCAAaaccaagacaaaaaaaaaaaataacatcctCACTTTTCCCAAGGGAATGAAAAAGAACCACTTTGTTAGCTTAACATTTGTAGcgtgtttttatttcttatttcttaatagtgtttttatttttattttttaactgttttacaAAAAGAGAGCTAGTGTGTCTGTCATGTATTGCAAACTTAAAAGCtgcagggatgcaccgatccaacCAATCCTGATGAGATACAAGGCTGAAAAAATGATTAGTGTATCATTGTACGGATTATTTCACCAGTAACGGTGGCCGTTCAATAACTTATTCACTCACTCAAAAGTCAAAGCAAATGGAGCTTTTTTCAtagattaaaattttttttttttaaatgcttgcAATCTCAAATAGAGAACTATTTTATCTTCCATCATTCCTgttaaaaagtaattaatttgATGTTAAAGTGTTgtactttttctgttttgtatctGCAGTGGAAAGTAGTATTGGTGCATTccttaaaacaaaagaaaagtaatTTGTTAAATTACAGCTCCCTTCCTCATTTCATTATGGTGTAAATGGAGAGTAACACAATGTATcagtcatttcaaaatgtttacaGTGACAAgtaggactttttaattttttttattttaagttttttcaaAGCGTAACAAAATCCAACCATAAAACCCCATTCACAGCCGGATGAATGGTAGAACCAGCTGTGTCACATTATCCCATTTTGTTACTAACAATTACAGAAAACTGGGAGCTGTAACTTAAAGTattgcagttaaaaaaaaaaatcaaccagGTTTTTGAATTTATGAtgatctctctctttttttttttttttctgtaagtATAGTTATCATTCATCCACATTCCTTGTGCGTTGACTAGTGGCTGAGTGAGTTCattttcagttcatttcacTTTTTACTCAACTCTAAAAAAAGAGGACATTGCTCATTAACAGGGGGGAATGAAAGGAATCTTAATTGGGTCAGTTAATTAAGCTCGAGAAGCCAAATGATGCAGGTGGAATGAATTCTTTGTGATATATTTGTaagttttactgtattttagAATTTCGTTTTTTTACGAAATGGACTGAAAATGAACTGACTTTAAAGCTGGTGCATACAACTTTTTGTACAGTTAAAAATTAAGGTTATTAGATGGGAGCAGTAATGCAGCTTTTCACTAGCTAAACGCTGTCCCTGGGCCCGCCCACTGTACGACACTAGCCATTCCTGTTGGGCCACAGGGGAAGCAAGGGAGCAGTAAACTGACTTTTGATTGGGAGAGAGGACCAGTAAACTGAAGGACAAATGGGAGATACAGTAGGGGTGGCGCTGTCTGTGTAGTGCCAACTAACCTACAACTCGGGAGCGAAAAAGAATTGGATGCGTATCGGCAAGTTTCACTCATGGTGTTCTCTACCCTGAAGTGAGTTAAAGCTGTTTTTAATATTCTTCGGACAATGCTTAAAACGCAACCTGCGATTCAAGCACAGGTACCAAAATGAGGTCATACAGTTGGAACAACTTGAAAAAACAGTCCCAAATTCAGAATGATGGAATTTCTACCAGTTTGCTAACCCTGCATCAGAGTTTGTCGTCATAGTTCAGCACTTAATTTCACTCCGACGCTTCTTTTCCTACCGGATTAGATAATGCCAACAAACCTTGCTAGATATAATGAGATCAATTCAGCAGGTCTTCGCGCATTTCTATCTTGCAGGAGTATCCTGAGCAAGTCTAGATAGAAGGCTACTGTGTTGATTGCTTTGAGAGTGCGTAGATAACCGATTATCTCGGCTCATACGGCGCATCTAGATGAGATTATCATACACCTGACGCCGGCTGTGTTGTAACTGTTTCACCACAACCAAATATTCTTCAGCAttgaagtgattttttttttttaatacatttttgaacCCGTTTTCAAAATGACATTCAGTCgtattctacatttttctaCCACATACACTCTGAATCTGCCAGTACACTACAAACAACTCACGGAAACAGTTACATGACAGTAAAAATGCAGCTTAAAGGGAAGTGTATCCGAGGGTTTGAAGTGCTCTTGAAACCCCTAAATGGAatcttgtgattttttttaattcattttttggtGTCCTTTTACCCAAATCTTCcacaaaaatgtgattttgtgtAAATATGGGTGACATTAAATGGGTTGGAATAAGGTGCTTGGTCTTAACGCATTTAGTCGACACAGATTTTCAGCGTGAGCTgcgaaaaacaaacacattctcCTGAAATGTAACTGATTGTAAGCAAAGAAGTGCCACAGATTAATATGAAAACATTCCACCTGTACCTGCCTAGATTTGTCTTGACGCCTCCAGCCTGCCAGGACAGAGAGGCATTTTGACATGGAGTCATTTTTCTAAATGAAGAAATATTAACACAACATTCCCCACATTTGAAATAGTATGCACCTCCTAATTTAAGCCCAGTTTCTTTCTGGACTGAGGCATGTCCAGACGATGGAGTGGTTTTGACTGTGTAGGCTTTCTATTGGTCACACTGGCCTAGCCTCCACTATGCAGTTGAATGACATTCCAGATGAGGGGGAAGCTTTAACCTCGAACCCTCTTGCAAAGAGACAAAGCAGCAGAAAAACATTAACCATGCAACACTAGGCAGCTTTGGAAGCTTTTGCTGttccaaaaaaaatcaaaaacaaaaaaaagcattggTTATATCACAACAACTACATTTGTAGGTGTTCTCATTTGTTGTCTTTTCTCTGTGAAGCTGATGTAATTGTTGAAAGGTGGGATTTATTGTGCGCCTTCTTGGACATTTTTAATATTGTCCCAGTTTTGACATTGAAGGATAACCACTACAAATCCAATTTTCTGCcaccatttcttttttcttttcttttttttttgtggtactTTTAGCTCCAGGTTTAAACTCATTTTCGAAGGTCTGGGCTCTGTTTTAACCAATGACGGGGGCTTTGGGGGCTGCGAGGTCTGGTTTTTCAAAATGTTGGCAGTGCGGAGTTTTATTTGTTAATCAAAAAATACTACTACAAATGAGTGTCTTGCCATCAGTCACTTTTATTAAAGATAGAAAACAGCACAGACAGACCGTTGAAAGTTTTCAGTGACTACCGTGGCAACTCCATAATGTCACTCCAAGCAACTGATGACGATTCTGAGCCAGCTGACGTTAAACCTGTCAGGGATCTCAACATGCTGACATTATGGAGGCCAGTGTTACGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250065 lncRNA downstream 128809 15792286 ~ 15792812 (-) False si:dkey-177p2.18
TU250061 lncRNA downstream 146135 15772686 ~ 15775486 (-) True G184668
TU250055 lncRNA downstream 186339 15734418 ~ 15735282 (-) True G184662
XR_005636867.1 lncRNA downstream 220622 15696500 ~ 15700999 (-) True LOC120546341
TU249791 lncRNA downstream 632736 15283249 ~ 15288885 (-) True G184452
TU250107 lncRNA upstream 32300 16012500 ~ 16015535 (-) True G184696
TU250117 lncRNA upstream 45018 16025218 ~ 16033730 (-) True G184699
TU250122 lncRNA upstream 57550 16037750 ~ 16042215 (-) True G184702
TU250125 lncRNA upstream 84471 16064671 ~ 16064914 (-) True G184705
TU250126 lncRNA upstream 86558 16066758 ~ 16068271 (-) False LOC120546224
XM_039781052.1 mRNA downstream 1981 15841146 ~ 15919640 (-) True tmem244
XM_039781051.1 mRNA downstream 72429 15841146 ~ 15849192 (-) False tmem244
XM_039781049.1 mRNA downstream 82105 15831779 ~ 15839516 (-) True fkbp6
XM_039781047.1 mRNA downstream 90835 15808083 ~ 15830786 (-) False arhgap18
XM_039781074.1 mRNA upstream 65719 16045919 ~ 16061907 (-) True stum
XM_039781075.1 mRNA upstream 65719 16045919 ~ 16061906 (-) False stum
XM_039781003.1 mRNA upstream 85654 16065854 ~ 16068309 (-) True LOC120546224
XM_039782021.1 mRNA upstream 101824 16082024 ~ 16098722 (-) False ehd3
XM_039782020.1 mRNA upstream 101824 16082024 ~ 16098722 (-) True ehd3
TU250064 other downstream 130063 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 1342452 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1423251 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2430493 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 2453556 13458616 ~ 13468065 (-) True fkbp1b
XR_005636881.1 other upstream 510450 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 849596 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 1781756 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 1782198 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 1782533 17762733 ~ 17762808 (-) True LOC120547353

Expression Profile