RNA id: XM_039781075.1


Basic Information

Item Value
RNA id XM_039781075.1
length 3289
RNA type mRNA
GC content 0.39
exon number 5
gene id stum
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16045919 ~ 16061907 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAAAAGGGGGCTTGTGTGTGCactttctctttgtctttgaGAGGTGTGTGGGTTGAGCGTGAtttgacagaaagaaagaaaaaaaaaggaagtgaaATTACTGAAAAGAGCTACACATCTTTCGAGGAtttcttttcaacattttttaaagaggAACTGTCATTTAGTCAACATTTCTTAAGAACATGTTGGACATGGAAACACATGACAGATATCAGTGACCTCTGATGAGACACTGTGCCCACTTTTGAGGACTTAAAGGGAATTGAGGAGAAGTCAACAGTCTTGAAGAGATTTTTCACCAAGAAAAAGTCTTGCTTTACTTATGACTTCTTGAGACTTCAACAGCTGGATCAGTCTAAAGCTGTTTTCAGAGCTAATAAaccagaaagaggaaaagagacacGGCGAGATGGCACAGAAAGAGCAGTTCCGTGTTATGACCGGGGACCATCTTGGGGCCAAAGCCATTGCTGGGGCCCCTGCAGCAGGTGGAGGAGTGGTGGTGGAGGTCAGGGAGAAGAAGGGTCCTCTGAGGGCTGCGATACCCACAATGCCATTCCCTTTGGCTGTCATCTGTCTGTTTCTGAACACCTTCATACCTGGACTCGGTACCTTTATCTCAGCGTTCACGGTGCTGTGTGGCGCTCGCAGCGAGCTGATCTCAGAGCgaggtgtttgttgtgtgttctGGCTCAACGTGGCAGCAGCCCTCATCCAGATACTGACAGCTGTTATCATGGTTGGATGGATCATGAGCATCTTCTGGGGAATGGACATGGTCATCCTGGCAATTTCTGATGGATATAGAGACCAGGATCTTCCTCAGGATGTCTGAGAGAAGTTGCCTTTATGTCTGCTGATAGATCACGTGGACAGTGGCTGCTGGTGGCCTTTGTCTTTGTGATGACCTATGGCGGTTTGTCTTTCAAATGCCGGACCAAAGAGAAAAGCAGAGACGTTCAAATAAATTAGCCACACAGGGAAATAAATAAGGAAAGAATCAGCTGACTGCTTCTGGTTGCACTCTGCTGACTGGTTGAGACCACATTTAAGTTTAGGGATAAGGACAAGGAAAAAGAGACCAAATCTCATCAAAAAAACAATGTGTTGTTGAGTAATTACTATATAAGagtgatttattttctttttattctgtcttttgatattttttatttaatctttttgaaaaaaacataaatctgttaaaaagaaaaaaaaaaaaaaaaaaaacaaaactagaCCAGACTAAATGTTTCCTACATGCCAGGGAGGAGAAAAGGTAGAagaaaggaagatgtgttggaATGACTGTGTTAGAAAAATTAAGATATTGCTATGCGaactttatttctgtatttttgcaTACATAACAGTTTTTCCCGAAACCAGCGTCACCAGTTTTCACTGCCACTGAATTGGCTGCCCGGTGCAGCAGTCGCTCCGCTTAAAGCAGTTTATTTCAGGTTTAGATCATGTTACTGGATTTATTGCCGAGTTTTACTGTAACATGGTCTGTTTGAAAGACACCACGTCGCTGCTCTGAGGAGTAACTGTAGGGTACTTCACTGAGAGGTGAATTTGTTTCACCTTAATCAACTCTCAGAATAAAACATGTTCCATCTTCTCTAAGGTGTTACTGTTTACACATGGTACAAAGTCATGCTGCCTTGCCACTAAATATAAAAATCACTTATTTGACAATCATTCAAGCCATGAATGTGGAGAAAACATGTCTTCCACTGGAGCATGTGATCAAACTGTAAATGGATCTGATACTCAGTAGGTTTGAACTTAATTGTGGTAATCGATCAGCCTATAGTTATTGTAGCTACAATATTTTCCTTTcaggcaatgttttttttgtaatagcAAACACATCTTTAACACGCTGACTCTCACCAGCTGGTCACAAGATGTGTGTCATCCTAAAATTACAGGGCTGTGTGCAAAATGATTTACATTTTTCACACCTCTTAAACGTGTAAATCAGTGTCAGAGGGATATTACACATTGTTAGAACATTGTATCAAATTACCTTTATGCCACTCTGGAAGCATAGTCATCACCCTGTCTGCTCCTTATGACCAAGATACAGTTACTGTGATTGAGTTTGTGTCTGAGGCCGCATTGGTCCATGTAAAGTCAAAAATTCACGCAAGCAGATTACAAGAATATTAAATTCCGAAATATTTAGGTGTGTACATTGTGTCCGTATTAATGTGTATGTGAGATATTGGAAATGGAGGTTGGAGAATATATGATATGGCCTCAGTATAACTGTGGGAATGTGTGTAGTGTGGGAAGGTGTGTAGATGGATAATTCTATTATGTACAAgagtatttaaaaatatttaacacaAATTGCCTTGGAACTATGGATCCAAACAAAGCCTTTGCCATGATGCCACGTCAGCTTTCTCATGCACGGTATCATTGGCTCACTTCCCTGCAAAATATcctatcaaaagtcaaagaGCCTTTTTCAAAACTAATAAAACCAGCATAGCTTCAGACGCAACACTAAAGAAAAGTGGGGCACTAAATCGAAATCACTGTTTGTAGGAAGCTCAGTTACTGCTGAACAAACTGAATGAACTTCAACTCGGGCTATTTGACAAAATGCTATTTAAAGTACAACTCTTATAATATGGGACGGATTCAGCAAATGTGGATTGAATGATAAATTCATGATATATTTATTCATGCATAAACTTCATATTCACTGATTCTTTGTAATCCTGTAGGTTTTAAATATCTTCATTATCTTATCCAAATGCCTTTATTTTAAGAGTACTGCTGTATTTTGGATGGCAACACcaatgtttttctgtgtttatgtTGTACAGTGTTTGTATGTGAGACAGAttaggatgatgatgatgatgtctgtaATGTTGATATTTTATGCCTTACAAAATGACCATGTTCTCCCAGAAGTGTTAGCAGTGATGCTGGAgtttatttttgctttgtttgggtTCAGGTGCAATTTACAGATCTGAATCATTGTTATTTGGACACTTTATTATTATGATGGTGTTGTTGTGCTAGCTAGATTGTAGAACGAACATACTGCCATGTACAGTTTTTTTGCATGCATAGCTTTGGTGTCAAGTCActgtaataaaacacacacacacacacacacacacacacacacacacacacacacacacttaactaTTTTAGGATTGTAGCTTTTTTCTGTGACTTTGGAACATTGGTTTTATTTGAAGTTGTTTGAGGTGAtttgtaattaaaaaatattggttTTAATCACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250122 lncRNA downstream 3704 16037750 ~ 16042215 (-) True G184702
TU250117 lncRNA downstream 12189 16025218 ~ 16033730 (-) True G184699
TU250107 lncRNA downstream 30384 16012500 ~ 16015535 (-) True G184696
TU250065 lncRNA downstream 253107 15792286 ~ 15792812 (-) False si:dkey-177p2.18
TU250061 lncRNA downstream 270433 15772686 ~ 15775486 (-) True G184668
TU250125 lncRNA upstream 2765 16064671 ~ 16064914 (-) True G184705
TU250126 lncRNA upstream 4852 16066758 ~ 16068271 (-) False LOC120546224
TU250127 lncRNA upstream 38238 16100144 ~ 16100732 (-) True G184707
TU250105 lncRNA upstream 63479 16125385 ~ 16145169 (-) True LOC120546331
XR_005636864.1 lncRNA upstream 63595 16125501 ~ 16145162 (-) False LOC120546331
XM_039781056.1 mRNA downstream 65719 15921621 ~ 15980200 (-) False epb41l2
XM_039781064.1 mRNA downstream 67527 15936698 ~ 15978392 (-) False epb41l2
XM_039781066.1 mRNA downstream 67529 15921621 ~ 15978390 (-) False epb41l2
XM_039781065.1 mRNA downstream 67529 15921621 ~ 15978390 (-) False epb41l2
XM_039781062.1 mRNA downstream 67529 15921621 ~ 15978390 (-) False epb41l2
XM_039781003.1 mRNA upstream 3948 16065854 ~ 16068309 (-) True LOC120546224
XM_039782021.1 mRNA upstream 20118 16082024 ~ 16098722 (-) False ehd3
XM_039782020.1 mRNA upstream 20118 16082024 ~ 16098722 (-) True ehd3
XM_039782769.1 mRNA upstream 40147 16102053 ~ 16108572 (-) True il20ra
XM_039781213.1 mRNA upstream 84750 16146656 ~ 16188330 (-) True LOC120546332
TU250064 other downstream 254361 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 1466750 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1547549 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2554791 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 2577854 13458616 ~ 13468065 (-) True fkbp1b
XR_005636881.1 other upstream 428744 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 767890 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 1700050 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 1700492 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 1700827 17762733 ~ 17762808 (-) True LOC120547353

Expression Profile