RNA id: XM_039781078.1


Basic Information

Item Value
RNA id XM_039781078.1
length 1414
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC120546258
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15720429 ~ 15723341 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGTGACTATTGTGTCAGTCCAGAGTAGATCTACCCAGGTCCTCAGTCATGCTGCGTCCATCATTCCTCAGCCTTCTCCTGGCATGTGCAGTGTCTCTTAGCAGCTCTGCTGTATTTCTAGAAAATGGCATGCCCATCCTGTGGGCCCAAACGGCCGGCCAATTGACTGACCTGCCGACACAGAATGGCATCCTGACCCCCGACCCATGGAACTTCCTTCATCGCATGAGTCTTTACCGTCTGATGATAGTTGCAACAGACCCTTTAATGGGATCAATGGGGACCAATGCCACAGACAGTCCGCTGTGGGGACTGCCACTGCAGTTGGGATGGATGCTTACCTCAGGGCGTCTCGCTGACCCAACCAGTGCTACCACTTGCGGCCTGCAAACAGGAGATACTATGTGTGTTTCTACTCAGAGCTGGTGGAGCTgTGTGACCTACTTTGTCTCTGTACTGCCCTTCCTGTCTGCTGCAAAGCAGGGCTTCATGGGAGAAGGAGTTCAGGTCCAGATGCAGATACCTGAAGGCGTACAGGACTATTGCACCACATATGCAAGCTGTGCAGCTAGCTACCCTGACGCCATGTCTAAGTGGGATGCCTTTTTCCAGGGCCTCAAGGCTGCAGCTGACTCTCCTCTCCCTGAAAATGAGAAGAAAGACTCTCTCCTTGGTCTCTACTGGGTGGCCCAAATGGCTTCAACTTATGCCTCTGCTGCATGCAACTCCAggCAGAGCCACTACTCCTCTACAGAGGTTTCCTTTGCAAAAAGCTGGCTGAACTCAGCTGAGTATGTTTCTGCTGCTCATTTCCAATCCAATTTGCAAAAATCTTCAATGTTCATATCCCCTCTCCCAAGCCGTATTTTGCGGGTGGACGACAGCGCGCCTAACATAGCCGATCTGAGTTCGGAGGAGAACCACACACTCTATGTCTTCTCCTGGATTAACAGTATGAACAATCTACTTGGTGGGACATTGGTGAGTATGTGGAAAAGTGCCATGTGTTCAGTGAACACAAGAGAGAAAGGCAGTAAGTTGCTGGAGGAGCTCCTACTGAATCCCAGCTTTGCCACACAAACTTTCCTGTCCATCATCACTGGAATGACTTCGAGCTGCTGAGACAAACTTAGAGAGATAGCAACTCTAATTACATAGTTGTCATTTTTTACAGTACATAATACAGGAGTACTGTGGTATTACTCAGAGGGAGGGATCCCTAAGAGAAGacacttgcagaacaaaaatgcATAATTGATATTTCTTTGAAAGTAAATGATGCCAATATTCAGAAGGTGTAGATCAACAGGAATTCCAGGTTACAATTTAAAAGCAGGTAGACCTCTGTATGTCTCTGTTCTCGTCACTCTCTTGTGAGTATGTGTGTCCCAATAAAGTATCAACAAACCCTAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636867.1 lncRNA downstream 19430 15696500 ~ 15700999 (-) True LOC120546341
TU249791 lncRNA downstream 431544 15283249 ~ 15288885 (-) True G184452
TU249756 lncRNA downstream 546310 15173711 ~ 15174119 (-) True G184420
TU249753 lncRNA downstream 546789 15169136 ~ 15173640 (-) False G184417
TU249752 lncRNA downstream 546789 15170118 ~ 15173640 (-) True G184417
TU250055 lncRNA upstream 11077 15734418 ~ 15735282 (-) True G184662
TU250061 lncRNA upstream 49345 15772686 ~ 15775486 (-) True G184668
TU250065 lncRNA upstream 68945 15792286 ~ 15792812 (-) False si:dkey-177p2.18
TU250107 lncRNA upstream 289159 16012500 ~ 16015535 (-) True G184696
TU250117 lncRNA upstream 301877 16025218 ~ 16033730 (-) True G184699
XM_039781222.1 mRNA downstream 25808 15688518 ~ 15694621 (-) True wdr21
XM_039781227.1 mRNA downstream 40177 15677870 ~ 15680252 (-) True pigh
XM_039781457.1 mRNA downstream 60938 15653902 ~ 15659491 (-) True vps18
XM_039781456.1 mRNA downstream 68134 15606068 ~ 15652295 (-) True ino80
XM_039782715.1 mRNA downstream 335842 15347760 ~ 15384587 (-) False syndig1l
XM_039781272.1 mRNA upstream 54082 15777423 ~ 15785606 (-) True chga
XM_039781274.1 mRNA upstream 65485 15788826 ~ 15795638 (-) True si:dkey-177p2.18
XM_039781273.1 mRNA upstream 72430 15795771 ~ 15806849 (-) True sel1l
XM_039781047.1 mRNA upstream 84742 15808083 ~ 15830786 (-) False arhgap18
XM_039781045.1 mRNA upstream 84742 15808083 ~ 15829802 (-) True arhgap18
TU249614 other downstream 1141260 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1222059 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2229301 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 2252364 13458616 ~ 13468065 (-) True fkbp1b
TU249197 other downstream 2504605 13206307 ~ 13215824 (-) False hmgn3
TU250064 other upstream 65573 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 767309 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 1106455 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 2038615 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 2039057 17762398 ~ 17762482 (-) True LOC120547359

Expression Profile