RNA id: XM_039781104.1


Basic Information

Item Value
RNA id XM_039781104.1
length 2496
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC120546266
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13911571 ~ 13918124 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTATTTTTCCAATTCACCTCTTGTGAGAAGAACTCCACCTCAAGAAGTCAGTTTTTTTAACTTATAGTGGAGTTGCAATGGCTTCAGGGAAGGAAAGTTGTGGACTTGACAATCTTGCATTTGATATGGATGTCAATGATCAACAAAGAGGAAAGGACGGAAAGAAGGATGAGGAAGACACAAATAAACCAACCTATTGTGTGACTGATGTTCCACCCTGGTACCTTTGCACTTTTCTGGCCATACAGCATTACATGACAGCTTTCGGTGGGATCGTCTCCATCCCCCTCATTCTCTCGGAGGGGCTGTGTCTGCAGCACGACAGCCTGACCCAGAGTTACCTCATCAACACCATTTTCTTCACCTCGGGCCTGATCACTGTGCTGCAGGTCACCTTCGGTGTAAGGCTTCCCATCCTGCAGGGGGGTACATTTGCTTTGGTGACCCCTGCCATGGCCATGTTGTCCATGCCAGAGTGGAAATGCCCAGCTTGGACCCAGAACGCCAGTCTGGTCAACACGTCCTCACCTCTCTTTATAGAAGTGTGGCAGACCCGCATGAGAACACTGCAGGGCTCTATCATGGTGGCCTCTGTCCTCCAGATTCTGGTTGGCTTCTCTGGGCTCATCGGCTTCCTCATGCACTTCATTGGCCCCTTAACCATTGCCCCCACAGTTTCTCTCATAGGCCTGTCACTGTACGATTCAGCTGGAGACAAGGTTGGCAGCCACTGGGGCATCTCTGCTATGACCACAGTGCTGATCATCTTGTTCTCCCAGTACCTCCGTCGCATACCAATCCTTGTTCCTGCATATAGCAAAGCCAAGAAACTGCACACCTCAAAGTTCTATATCTTCCAAATAATGCCTATTCTACTGGGCATTTCGGTTTCATGGTTAGTCTGCTACCTCCTCACTATCTATGATGTCCTACCATCGGATCCAGCCCAATATGGCCACCTGGCTCGCACTGATGTGAAGGGAGATGTGCTGAACAAGGCTTCCTGGTTCACATTTCCTTATCCTGGTCAGTGGGGCATGCCAACTGTGAGCCTGGCAGGTGTGTTTGGCATGATGGCTGGAATAATATGCTCCATGGCAGAGTCTGTGGGCGACTACCACGCATGTGCCAGGCTGTCAGGGGCGCCTCCCCCTCCCAAGCACGCCATCAGCCGGGGCATTGGTGTCGAAGGGCTCGGCAGTTTGTTGGCAGGGGCCTTCGGCACAGGCAACGGCACTACCTCATTTAGTGAGAACGTGGCTGCCCTGGGTATCACCAAAGTAGGTAGCCGAATGGTGATTCTTCTGAGTGGCGTTTTCATGATATTGATAGGGATGCTGGGTAAAATTGGAGCCATCTTCACCACTATCCCCACCCCCGTGGTGGGAGGGATGTTCCTGATCATGTTTGGAGTCATAACTGCAGCAGGAATTTCTAATCTGCAGAATCCTGATTTCTTAGAAACAGGTGTTGAAGAGGTAGACCAAGTGTTGCGCATATTGTTGACCACACACATGTTCATCGGAGGGTTTCTTGGCTTCTTCCTAGATAACACAATTCCTGGGACCAAAAGTGAGCGTGGCCTCTTAGCCTGGAACAAAGTACATCTTGAGGACTCGAGCTACACCTTGGCAACTGAAGAGGTGTATGACCTCCCTTTTGGAATAACCTCTTGCCTATCGTCCCAATCTTGGGTTCGTTACATCCCCTTCTGCCCATGGAACGGCCACAGATCTGAGAACAGGTCGGAAGACAACAAAATGCCACAAGGCCGAGGGAGTGAGCAACTGCCCCACAGCACATGGGTCATTGATGAATTAGCCTTCTAGCTTTCTAGTTTGCTGAACTAGAGGTGGTGTGATAAAATGAAATCTCTCAAATCCTCTCTTTTTAGGTCAAACTGCTGTTTCTGATAAATGAAAAGGGGTCACAGAAATATTGTCTAAGGAATCTTTAGACTATAGCCATCACTGGTTGATAAGGTCAAGATTTATGTTTAGGTATTTCACTGTCCTATGTAATAAACTGCCAGCAGTGGGTTTTATTTTGCtgtgtaaaacatgttttcaataTGCGAGCCTGACTagtggcggttctacattgaatgacGCCCCAGCCCTAtttttatataggctacattattGTATTTAacatcattgtttttttggttttgttattTCAATACTGGAATTCTAAATCAATCTGTTGAAATGCACTAACAAACTACTACAATAACTAATAACTATATGATCTAAGCTAAATGTATGAATGATATGCTATGAATTTATTGAATGGATGTTTCCTACTAACATCCCAAAAAAAGATGAGTGATGTGTCTTCACCTACAGCAGGCCTACTTAAAGAGATGCTGCATCTACTGTATGACTTCAGCTATGTGATCAATGATCAATGTTATGGCTTTGAGCTCAAGTTAATCTCTGTTATAGAATGTGACCAATGTgcaatatacaaaataaaaagcaaatttTATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249399 lncRNA downstream 69094 13842272 ~ 13842477 (-) True G184162
XR_005636829.1 lncRNA downstream 512996 13339183 ~ 13398575 (-) True LOC120546199
XR_005636830.1 lncRNA downstream 512996 13351138 ~ 13398575 (-) False LOC120546199
TU249249 lncRNA downstream 592641 13318488 ~ 13318930 (-) True G184049
TU249235 lncRNA downstream 653609 13255986 ~ 13257962 (-) False runx2b
TU249445 lncRNA upstream 200898 14119022 ~ 14141806 (-) True G184204
TU249450 lncRNA upstream 269304 14187428 ~ 14231705 (-) True G184208
TU249466 lncRNA upstream 304851 14222975 ~ 14225219 (-) True G184217
XR_005636876.1 lncRNA upstream 320302 14238426 ~ 14243275 (-) True LOC120546499
TU249475 lncRNA upstream 331090 14249214 ~ 14328936 (-) True G184224
XM_039782318.1 mRNA downstream 1439 13889340 ~ 13910132 (-) False gpcpd1
XM_039782320.1 mRNA downstream 2938 13890786 ~ 13908633 (-) False gpcpd1
XM_039782317.1 mRNA downstream 2945 13889340 ~ 13908626 (-) True gpcpd1
XM_039782319.1 mRNA downstream 2948 13889340 ~ 13908623 (-) False gpcpd1
XM_039782321.1 mRNA downstream 6396 13889340 ~ 13905175 (-) False gpcpd1
XM_039782334.1 mRNA upstream 20489 13938613 ~ 13944833 (-) True trmt6
XM_039782650.1 mRNA upstream 28580 13946704 ~ 13957138 (-) False fermt1
XM_039782649.1 mRNA upstream 28580 13946704 ~ 13957137 (-) True fermt1
XM_039782651.1 mRNA upstream 63141 13981265 ~ 13987401 (-) True bmp2b
XM_039782010.1 mRNA upstream 326317 14244441 ~ 14322141 (-) False pak5
TU249319 other downstream 420443 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 443506 13458616 ~ 13468065 (-) True fkbp1b
TU249194 other downstream 695747 13206307 ~ 13215824 (-) False hmgn3
TU249578 other upstream 554077 14472201 ~ 14498370 (-) True G184299
TU249614 other upstream 653631 14571755 ~ 14579169 (-) False naa30
TU250064 other upstream 1870790 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 2572526 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 2911672 16829796 ~ 16835983 (-) False gpatch2

Expression Profile