RNA id: XM_039781140.1


Basic Information

Item Value
RNA id XM_039781140.1
length 2594
RNA type mRNA
GC content 0.57
exon number 5
gene id LOC120546291
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 629191 ~ 652352 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAGTTGATATTTCCGCCGGTTTGACCGTGTGTTGTTAGCAGAGTGAACCGTTAGCTGGAACTGCATAACTGCAGAAAAAACAAACCGTCAAGAGTTTAGTTCAGTAAGCGGAGAGAGGCGGACCGAACCCGGATACTGCTGCTGCCGGTTAGAACCGGAAATGAAGTCGAGAACAACAACAGatgttgagcagctgttggtggttaaagaagaggttcccccGGAACAGCAGGAGTGTAgttccagtgtggaccagcaggagccaaagccccccccacacattaaagaggaacaggaggaactgtggagcagtcaggagggagagcagcttcaagggctggaggaggctgatatcaccaagttcccattcactcctgtccctgtgaagagtgaacatgatgaagaggaagatgttcagcagctgttggtggttaaagaagaAGTCGAGGAGCCGGAGGAAACAGAAACCGTCGGCGACTCGAACAGAGCTCCACATCTCCACCCTGAACCCGACAACAACAAGTCCAACTCTTCAGACGGCGACCGTGCAGAGTCTCCGTCGCTTTTAAACTCGTTGCAGATTCTCCGAGTCCCCGCCGGCGATGCCAGACACAAAACCGGCAGGAAAAAGAAGACGTATCGCTGCTCCGAGTGTGGGAAAGTTTTCGGCCGCAGCCCGCATCTGAAGATCCACATGAggactcacacaggagagaaaccctTCAGCTGCCCCGTCTGCGCCAAGAGCTTCACGCAGAAGGTGAATCTGACGTACCACATGTCGGTGCACACGGGGGAGAAACGCTTCAGCTGCCGCATCTGCGGCGAGAGATTCACGTGGTACACGCAGCTCAAGAGTCACCGCTGCCTCTGCGAGCGCCCGAGTCGGAGAGACGAGAccagagaggcagagagcagcgggaacagagaggcagagggcAGCGGCGAGAAGCCGTTCGTCTGCGGCCGGTGCGGGAAAACGTTCAGCCGCAAAGACAACCTGAACATCCACACGAggatccacacaggagagagaccGTTCAGCTGCTCCGTCTGCGCCAAGAGCTTCAAACACGGAGGACACCTGACGCAGCACATGTCCGTCCACAGGAAGGAGAACCGCTTCGGCTGCCGTGACTGCCGCCGGAGATTCACCTGGCGCTACCAGCTGCAGAGACACACCTGTGGCGGAGAATCCTCTCTGCGTGTAGACGAGGAAGAGGAAGCTCTGTCCTCACAGCTTCAccagagacaaactcaacacatggaaacagaagctgatggagaggaccgtggaggaccagaaccagccaggaactcgcATCCACcattacaaccagagactgaagaccagactggagactcttcagAGTTGAACATTAAGGTTGAACTCAGCGACGAGGACGAGGGCAGAGGACCTCACTCAGgtTCCAACTACGACGCAGGAAGTACCGGCGGCCGGAAGTCGTTCCGCTGCTCCGACTGCGGGAAGACGTTCGGCCGAAAGGAACATCTGCAAACCCACGCTCGGATCCACACGGGCGAGCGGCCGTTTGGCTGCTCCGTCTGCGGCAAAACCTTCGGCTGCAAGCGCTCGCTGCTGGGTCACATGACCAGCCACACGGGGGACAAGCCCTTCGGCTGCTCGCAGTGCGGGAAACGCTTCGGCCGCTTGGTGAACCTGAAGACGCACGAGAGGCTGCACACGGGCGAGCGGCCGTTTAGCTGCCCGTTCTGCGGGAAAGGCTTCACGCAGAAGGTTCACATGACTCAGCACACGGCCGTGCACACGGGCCAGAAACAGTTCTGTTGCAGCGTCTGCGGAAAACAGTTCACCTGGCTTTCCGGGTTCAGGCGACACAAGTGCGGCGGCGAGGCGGAGAGCCAGACAGAGGCGAACTCGGAGGAGAACTCGGAGGCGGAGCCGGGCGAGAAACGGTTCCGCTGCCGGCAgtgcggcagcaaatttaaccACAAACACAACTTGAAGGcgcacatgagaatccacacggGAGAGAAGCCGTTCGGCTGCTCCGTCTGTGCCAAAGGCTTCGCGGCGAGCGGCGCTCTGAAGAAACACCTGCGGACGCATTCGGGGGAGAAGCCGTTCGGCTGCGCGGTGTGCGGCGCACGCTTCACTCAGGGCGGGAACCTGAAGCGGCACATGGCCCAGCACGCCGGGGACACGCGGCCGAAACCGTTCGGCTGCACCATCTGCGGTAAAAAGTTCACACAAGTGTCGAACATGAAGCGACACACGGCGCAGCACGCCGCCgcacaaacaggaagtgaagtcGCTGAGCAGTTCAGATCTTACCCAGGAagaaacaagctgtaatgtaaccctacaggacaaatgttcagcatcagtcagCGTCCATTAAAAGTTCTGGTTTTggcgctgacagactcagaagtgtctgacaacattatgggatggatccctacagagatagagcttttagtaaaagagtaagatccttttagtttaacatgagaCTGTCCCAAAACCACCATCACCaatcccaccagactccatgtaaataatcaggacttttatcaccgtaaaacacacttcattcaaagtggacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245765 lncRNA downstream 1455 627284 ~ 627736 (-) True G181292
TU245709 lncRNA downstream 278482 350497 ~ 350709 (-) True G181243
TU245692 lncRNA downstream 409019 219778 ~ 220172 (-) True G181233
TU245684 lncRNA downstream 480691 148223 ~ 148500 (-) True G181226
TU245681 lncRNA downstream 488795 140190 ~ 140396 (-) True G181223
TU245772 lncRNA upstream 144 652496 ~ 652799 (-) True G181299
TU245799 lncRNA upstream 37873 690225 ~ 690483 (-) True G181326
TU245803 lncRNA upstream 70314 722666 ~ 722880 (-) True G181330
XR_005636859.1 lncRNA upstream 74857 727209 ~ 729441 (-) True LOC120546304
TU245898 lncRNA upstream 218305 870657 ~ 873449 (-) True G181388
XM_039781157.1 mRNA downstream 3248 611228 ~ 625943 (-) True LOC120546300
XM_039781156.1 mRNA downstream 3248 611505 ~ 625943 (-) False LOC120546300
XM_039781159.1 mRNA downstream 15188 611505 ~ 614003 (-) False LOC120546300
XM_039781158.1 mRNA downstream 16291 611505 ~ 612900 (-) False LOC120546300
XM_039782629.1 mRNA downstream 18203 609658 ~ 610988 (-) True LOC120547160
XM_039782630.1 mRNA upstream 15512 667864 ~ 761905 (-) True LOC120547161
XM_039781152.1 mRNA upstream 136419 788771 ~ 790942 (-) False LOC120546297
XM_039781151.1 mRNA upstream 136420 788772 ~ 790942 (-) True LOC120546297
XM_039781871.1 mRNA upstream 245579 897931 ~ 909172 (-) False ginm1
XM_039781870.1 mRNA upstream 245579 897931 ~ 909171 (-) True ginm1
TU245660 other downstream 549881 57976 ~ 79310 (-) True G181206
TU245649 other downstream 580438 47081 ~ 48753 (-) True G181196
unassigned_transcript_965 other downstream 619642 9478 ~ 9549 (-) True trnad-guc_17
unassigned_transcript_996 other upstream 176111 828463 ~ 828534 (-) True trnad-guc_18
unassigned_transcript_1000 other upstream 184822 837174 ~ 837245 (-) True trnad-guc_19
unassigned_transcript_1002 other upstream 189602 841954 ~ 842025 (-) True trnad-guc_20
unassigned_transcript_1005 other upstream 195410 847762 ~ 847833 (-) True trnad-guc_21
unassigned_transcript_1007 other upstream 201799 854151 ~ 854223 (-) True trnav-aac_19

Expression Profile