RNA id: XM_039781144.1


Basic Information

Item Value
RNA id XM_039781144.1
length 3064
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC120546293
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 278422 ~ 286568 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AaaaagctatttatttattgttttgggTGAATATAACTTTGTTTGAAGTTATCTTAACTTGCTTAGAGAGACTATTTGGAACTCATCCAATCAGCAAGCAGGGCTGTGAGTGAGCATGCGCAGTAGAAGCCACCACCGTTCAGTCTCCTGCTCAGGATTGTTAGCGGTGCCAATCGGACTGAGCCAACACATTTTCTGGAATTTGCCGACAAATTTGCTAGAGATTTCATCGCTTGTGGAACAATAAGAAGTGCTTGTGGCAACTGCCTTGAGGGCTCTTCACAGCTGCTTTGTCAGTGGGCCTCAGTACACTGGAGATAAAGCTGACCAACCACAGATCATTCCAAAGACCTTCATCGCTAAGGGAACCATTGTGGGCAACGGACACGAAAACTGGGCTCTCCTGAGGCTGCTTCCATTGATGGACCATGGGAAGCTATAAACTAAGAATCATCATAAATGAAGGGGACATACGGAAAGTGTCACTGGACAGAAAACCAGAAACGGTTGAAGAGCTGaagataaaagtcaaagaaaaatGCAACCTGCAGGATGACTTCAATCTTATGTATGAAGACCCTGACTTTGGTTATTCCCTCTGCAACCTAGATGACATAGGAGACTTGCCAGCTACAAAAGCAACTGTGAAGGTCATTTCATTGGTGACACTGACACTGGTGCCTGCTTCCACCACCAGCATTTCTGATGCCTCAAATGTCTCAGATGATACAGAGATTCTGTCGACATACagctcatcatcatcaacaagaCAAGAGCAATGGCCAGAGTTTTTTGAGATTCCAAACTTCTCGGTTGATGTAGAATTCAGACTGAGACAGGCTAATCTTCAGTTTTTACGAGACCAAACTTACCTGAATGTACCAAGAGACATGAAGCATGGTATTTTGGAGAAGCTTGCTGAAGCGATCTACAAATTTGATGCCTATCCAAATGAAGAACGATGCCATTCTGTGGCATTGGCGCTCATAAGCAAACATCCCTGCCTGAGGGAACCAGGCTCGCCAGATGGGTGTTCTGGCTGGAAGAATAGCTTGACATACAAAATGGGGAACTATCGCACTAAACTGAGAAAAGCTGGATGTGCAGAAGTTGCTATAAATCAGGGTAAAAAAGGCGCCCCAGGAATGGCATCAAAAGGCCTCAAAAGACCAAAAAGGTTTGAGGTCAATTACTTACCAGACCTCCCTGAGGGGCAGAATGAAGATAGACTAGAAGTTGAAAGAAAGCTCCTGGTTGAAGAAATGAAAAAACGGAACCCCAGTGGAACAGTCATTGCATCTAAGATGGACCAGACATTCCCACTGCGGAGACGGGAGATTGTGGAGGCTGAACCTCCAGTGAAAACCCTGAAGGAGCGCTGGCCAGCTCTTTTTACAGAGAGACAAGTGTTTGCTGAGTTCAACAGGATAGCCACGACAAACCTGGAGAATGACTTTTTTGGTGCTGTTGACCGCTACACACCACGCTTTGTCACAATCTTCAAGTCCAAGAAAGGAAGTGTTGGAGAGAAACTGGCTGAGATTGTGCAGCAAATTGATTCAAGGAAACCAGATGTGACAGCAGTGCGTACCCTTGTTCTCCAAGGCATCCCTGTTCTGCTTGGTGATGACCCCAGTAACTTCTACAACACCTCCTTTGATTCTGACAGTGATGAGGCCTGGGACCAGGTATCTGTTGGGTTGCTGACTGTCATCAGTGAAGATGTGCCCCTCTCGCCAAATCATCTCCATCTTGACCCAGTGTCTACTGCCATCATTCTTGAAGGAGGTATTGTAATGAACAATCTCCAGAACCTACCTCAAGCACTTTGCCTCTTGTTTGGGTTGTCCTATGCACTACACTTGGACTACCCTAAAGCCATGAAAAACACATTCAGCTTCATTCAACGAGTGATGCTTGGCCTGGGAGAGAACAAACTCCCCCCCAAACTTCAAACTCTTAAAAATCTCCTGTTGAGTTAGAATGGTAAAAATCAAGAGTGACACTTGGCATACAATCTTGTTTATAAAAGTGGGTCCAGTTGCTTTTTATTGTTAGCTAAATTAAGGCACTCCTTTCATATTGTTTTATATCCACTGGGTTCATCAGCAAGTTACATTTAGAGGCTGCAGGTGTATGGTCATTCATACGTGTATGAGATCGGTTGCCATAGTCATTATTGTACAATAACTGGATGTCACTTGTAATAGTCAGCAGGTTGATACTGTCAGCAGTTTGGTCTTTAAACTTTATTGTTAATACAAAAGTAAAGCAGTTTCTCAGGATTATGTTAAATAAAAGGTCAGGGTTGGAATTTTCTTTCCACAAATGAGAAATTTATGTCTTTTTATAAAGCCAAATACATTGGCTGCCAATTATTACTGGAAGATTATTGAAGAACAATTTTGGTACCGATGTATATTGGCAAATAGGCAAACATTCAATCCAACAAAGTCCATTGTTCACATCCCTTGGTGTTACTTTCACTCTGTACTTTTgaagaatgtttttatttttatattttatggtaGTGTAATAAGCATGTATGCGCGTTCTGGTTCTGAGAAGAGATATTCTGTGGTTGGCGCTAATACCTTGACATTTATCATTTTAGTCTGAATGTTGTCTTCAAGTGGTACTGATCACTTATAGTAATGACTAACATTTTAATCTCCTCAAAACCAATTAGTATCTCTGTCAGCTGTCTAAGGTGCAGATTTGACTGTTTTCCCTAAACATCTCTAATCAAGTATATTTCCCAAAAATTCATACTCCTATAAATAATTcggtaaaaaaaagttaacaataAAATTACTTATCAGCCAAGTCAAGAATTCAAAATCGTGAAATCCTGTGCcaaaatttgattgattgaaataaaAAGGTTTATCTTGGCCAAGCACACCATAATAATTTTTAAGATGATGAAATACAATCAGtataaaattacaaatgtcAAGGTAATGCATACTTTATACCAGATCAAAGGGTTTTAAGACTTTGATTTTAACATTGTAAACTAACAATGGTTGAGGTTCAAGGAATAAACCTGTTTCAACTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245692 lncRNA downstream 58250 219778 ~ 220172 (-) True G181233
TU245684 lncRNA downstream 129922 148223 ~ 148500 (-) True G181226
TU245681 lncRNA downstream 138026 140190 ~ 140396 (-) True G181223
XR_005636860.1 lncRNA downstream 142836 134823 ~ 135586 (-) True LOC120546305
XR_005636858.1 lncRNA downstream 220573 55936 ~ 57849 (-) True LOC120546303
TU245709 lncRNA upstream 63929 350497 ~ 350709 (-) True G181243
TU245765 lncRNA upstream 340716 627284 ~ 627736 (-) True G181292
TU245769 lncRNA upstream 348288 634856 ~ 635203 (-) True G181296
TU245772 lncRNA upstream 365928 652496 ~ 652799 (-) True G181299
TU245799 lncRNA upstream 403657 690225 ~ 690483 (-) True G181326
XM_039782625.1 mRNA downstream 238789 37505 ~ 39633 (-) True LOC120547155
XM_039781148.1 mRNA upstream 249421 535989 ~ 550593 (-) True serinc1
XM_039781150.1 mRNA upstream 266772 553340 ~ 572016 (-) True slc35f1
XM_039781155.1 mRNA upstream 291776 578344 ~ 591833 (-) True nus1
XM_039782629.1 mRNA upstream 323090 609658 ~ 610988 (-) True LOC120547160
XM_039781157.1 mRNA upstream 324660 611228 ~ 625943 (-) True LOC120546300
TU245660 other downstream 199112 57976 ~ 79310 (-) True G181206
TU245649 other downstream 229669 47081 ~ 48753 (-) True G181196
unassigned_transcript_965 other downstream 268873 9478 ~ 9549 (-) True trnad-guc_17
TU245770 other upstream 352242 638810 ~ 639513 (-) True G181297
unassigned_transcript_996 other upstream 541895 828463 ~ 828534 (-) True trnad-guc_18
unassigned_transcript_1000 other upstream 550606 837174 ~ 837245 (-) True trnad-guc_19
unassigned_transcript_1002 other upstream 555386 841954 ~ 842025 (-) True trnad-guc_20
unassigned_transcript_1005 other upstream 561194 847762 ~ 847833 (-) True trnad-guc_21

Expression Profile