RNA id: XM_039781178.1


Basic Information

Item Value
RNA id XM_039781178.1
length 1272
RNA type mRNA
GC content 0.49
exon number 10
gene id ctsbb
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18977830 ~ 18981178 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATAAGTTGCTGCTTGTAAAAAGGGCAGTAAGAAGTCAGAGGACTGGTGTTTAATTCAGTGAGAGAAAGGAATTGTCCAGAACGTCGTTTGTCACAACTACAGGATGCGTCCACTGGCTCTCTTTTGTGTACTTGTGACTGTCTCTGTCACCTGGGCGCGGCCTCACCTCCCTCATGCCTCATCCTCAGAGATGGTCGACCGTATTAACAAGGCCAACGCCACCTGGACGGCCGGGCAGAACTTCCATAACATTGATATCAGCTATGTGAAGGGACTGTGTGGGACTATACTGAATGGACCCAAGCTGCCAGAGGTGGTTCACAGTACTGAAGGCATAAAGCTTCCGGACAGCTTTGACGCACGCCAGCAGTGGCCCAAGTGTCCCACAATCCAACAGATCAGGGACCAGGGATCCTGTGGGTCCTGCTGGGCCTTTGGGGCAGCTGAGGCGATATCCGACAGGTTATGTATCCACAGCAGTGGTCAGATCTCTTTGGAGATCTCTGCTGAAGACCTACTGTCCTGCTGTGATGAATGTGGCATGGGCTGCTTTGGTGGTTTTCCCTCTGCTGCTTGGGAGTTCTGGGCAAAGAAAGGACTTGTGACAGGAGGCCTGTATAGCTCCAAAGTTGGCTGCCGACCCTACAGCATCGCTCCCTGTGAGCATCACGTGAATGGGACTCGTCCTCCGTGTCAGGGTGAAGGAGAGACTCCTAAGTGTGTGGAGCAGTGCATTGATGGATACTCACCGTCCTATCAGAAGGACAAACACTTTGgtaaacacacatacagcgtCCCGTCCAAACAGGAGCAGATCATGACCGAGCTGTACAAGAACGGGCCTGTGGAGGCAGCTTTCTCTGTATATGCAGATTTTCTGCTGTACAAGGCTGGTGTGTACCAGCACATGACAGGGGAGATGCTGGGAGGTCATGCTATCAAGATCCTCGGCTGGGGAGAGGAGAATGGGACGCCCTACTGGCTGGCTGCAAACTCCTGGAACAGTGATTGGGGAGATAAAGGTTTCTTCAAGATCAAACGTGGAAATGATGAGTGTGGTATTGAGTCGGAGGTGGTTGCAGGAATTCCACTCAACTAGATTAAATGAGTCCTGGctgcaaaaaaattgtcaaatcaagtcaatcaggaaatattaaaataaagaccTTATTTTCTAAAAGACTTGAGTATTGCATTTAAAGGCATTCACATATAGAGAGATTTCAGTTCATCATCAAGGAATAAATTGCACAACATGGTGAAACAAGAA

Function

GO: NA

KEGG:

id description
K01363 CTSB; cathepsin B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251241 lncRNA upstream 156684 18819084 ~ 18821146 (+) True G185495
TU251197 lncRNA upstream 265863 18705908 ~ 18711967 (+) False LOC120547227
TU251198 lncRNA upstream 272596 18703965 ~ 18705234 (+) True G185471
XR_005636898.1 lncRNA upstream 287797 18666640 ~ 18690033 (+) True LOC120546607
TU251128 lncRNA upstream 332676 18643419 ~ 18645154 (+) True G185415
TU251367 lncRNA downstream 33548 19014726 ~ 19019533 (+) True G185589
TU251368 lncRNA downstream 41518 19022696 ~ 19023030 (+) True G185590
TU251369 lncRNA downstream 43086 19024264 ~ 19024578 (+) True G185591
TU251370 lncRNA downstream 62046 19043224 ~ 19043548 (+) True G185592
TU251371 lncRNA downstream 64236 19045414 ~ 19046107 (+) True G185593
XM_039781177.1 mRNA upstream 379 18966206 ~ 18977451 (+) False fdft1
XM_039781176.1 mRNA upstream 379 18968924 ~ 18977451 (+) True fdft1
XM_039781175.1 mRNA upstream 19028 18948320 ~ 18958802 (+) True gata4
XM_039780966.1 mRNA upstream 159387 18814777 ~ 18818443 (+) False LOC120546190
XM_039781179.1 mRNA downstream 999 18982177 ~ 18989774 (+) True LOC120546316
XM_039781180.1 mRNA downstream 9768 18990946 ~ 19003030 (+) True prkg3
XM_039781706.1 mRNA downstream 89491 19070669 ~ 19076482 (+) True si:ch211-203k16.3
XM_039781705.1 mRNA downstream 89491 19070669 ~ 19076482 (+) False si:ch211-203k16.3
XM_039782387.1 mRNA downstream 115881 19097059 ~ 19102420 (+) True moxd1l
unassigned_transcript_1081 other upstream 45443 18932316 ~ 18932387 (+) True trnae-cuc_27
XR_005637008.1 other upstream 922904 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 925759 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 1060582 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 1291432 17682558 ~ 17686398 (+) True G185145
TU251420 other downstream 222976 19204154 ~ 19208096 (+) False LOC120546624
XR_005636888.1 other downstream 448417 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 448417 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 448418 19429596 ~ 19539208 (+) False nhsl1b
TU251521 other downstream 653105 19634283 ~ 19648156 (+) False acp1

Expression Profile