RNA id: XM_039781222.1


Basic Information

Item Value
RNA id XM_039781222.1
length 3173
RNA type mRNA
GC content 0.45
exon number 13
gene id wdr21
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15688518 ~ 15694621 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttagctagcttatGAGGGTTGAAACTGTAACAAAACATCAGtttattaagaaaataaagaatgtttacattcaaccgaaagcctgtttattAACGTAATAAAACCGTATTCACGTTAACTCGTGTTTAATTTCCACCATTACTAGAAAGGTGTCGAGAAAGATGTGTAGtcaacgttagctcaaaaatgCTAATGACTGCAGCTtgctaacttagctagctaacaagtAAACATGCTGCATCAAGTAGCCTTACACACTCGAACACATAGCTAGAAGTTAATAATAGACAGCGTGGCGAGAGGATCCTTAGCTACTTGTGGACTCAAACAGCAGGGATGAAGAAGTGGAACTGGCAAGAAGGACAGCGACCGTACAGGCGACGAGGTGCTGGTCAACGCCATGGTTGGTATAGAGGCAACCGGCAAAGGTCAACACAGGATGATCAGTGGTCTGGACATAATGATGCAGGGCCATCATTTAGAGCATCTCAGAGGAGAAATGAAAACCAGTCTGCGCCTGTTTCGtcgtcctcctcttcttcctctaaTAAGACCAGCAGTGCTGCACCAGAGCTGCCTGGTTTCTACTTTGACCCGGAGAAAAATCGTTACTTTCGCCTGTTGCCTGGACATAACAACTGTAACCCGCTGACCAGAGAGCAGTTGcaggagaaggaaagagagaaacagagaaacaagATGCTCGCGGAGGATGAAAAGCCCAGAAAAAAAGCACCAAGAACAGGACTGAACTCTTCGCTGCTGCTGCAGAAAAGACACCTTGGCATGTTACCAGAGAACTCCTATTGCAGGCTGGTCCATGAGGTGAAGGTCAGTGGAATGAGACGCCACAAACTAGAGATCCAGAGCACGGACAACAGCAACCCCAACACTGACAACTTCCGGCTCATAGTGGGGGACTCTGCATGTGAGCGAGTGTTCACAGTCAATGATGTGTCACACGGAGGCTGCAAGTACGGCATCATGaacttcagcagcagcagccggggATCTCTGTCTGTGGAAATGTGCGACAACCTCTACTTCACAAATCGCAAGGTGAATTCCATCTGCTGGGCCTCGGTCAACTACCCAGACTCCCACGTCTTGCTGTGTCTGGTAGGAGCGGCAGACACCCCCGGCTGCGTCAGTTTACTTCCTGCTTCCCTCTTCAGCAACTCCAACCCAGACCAGCCCGGGATGCTGTGTAGCTTTAAGATATCGTCAGCCTGGTCTTGTGCGTGGTGCTTCAACCCCCAGTTTGACAAGACTTTTAGCACTGGCCTGTCTCGTAGAGTGATAGTGAAAGATGCAGAGACGGGCCGAACGCAGACGTACAGCACCGGCAGCGATGTCTTGGCTCAGCAGTTTGCCCTTAGGGTCCCTGTTCTGTTTAACGGTTGCCGATCAGGAGAGATCTTCAGCATTGACCTGCGGCAGCGCGGCGGCCGCAGGGATCAAAGCTGGAAATCCAGCCGCTTCCATCAAGAATCAGCCATCACCTCCATACGCGTCCTGCAGGATGAGAACTACCTGCTTGCTGCTGACATGCTGGGCCAGATTAAGCTGTGGGATGTGCGAGTGACTAAGGCAGTGCAGGAGTACAAAGGGCACTATAATGAGCACGCCTACCTTCCCATCCACGTCAATGAGCCTGAGGGGCTTGTGTTGGCAGTCGGTCAGGATTGCTACACAAGGTTATGGAGCCTAAAAGATGGCCACCTACTGAGGACTATCCCATCCCCCCACCCGACCGCAAACGACCTGATCCCGAGCGTGGTCTTCTCCTCCAAGTTGGGTGGCTGCAGGGGGCTCCCCGGCCTGCTAATGGCCGTCAAACACGACCTTTACTACTTCCCATACAGCACCGACTACCAGGAAGGAGGAGAGCAGCCGGCCAGCTTTTAGGGAAAGACTCAGAATGCTTCTTCTCAAAAATCATTCTTAAGACAAGGAcaccatctttttctttttgccaaaTGTACGGATGGAGTTATATTCATATATAAAATCTATAGGTATTTTATAATTGAAAGGGTTCGACCACGTGTGCAGGTCATTTCCACAAGGTTGCAGTGAACTTTTGATTGGGAAGATGACCTCGGAAGAGTTACATTGAAGTCTCAGGGGAAAGTTATTTTTTGACCCACGTGTTTGTGCCAAAAGGAATTAGAAGTGCTATATACACGAGTGCACACAATTACTACAGTTAAGATTTGTGTAACCTTTACACAAAAGTGCTCTTACTTGTGACATAATTGACGGTATGATTTCTAATGTAATTTAAGATGTCTCTGATCTGAATTTGAAAAGAATGATACTGCGTTTATACTATAAATCAGTTTATAATTGCTGTTAttctaaagaaaaaagaaagaaatggttAACACAGTGATCTGTTGCATTGTATTTGCTCCTAAGTGACACACAGACGGAGTTTCTGCAGTTTAATACATAACGGTATGAGCATACATGAATGTAAAGGTATTGATTTGTTCTTTGTGATATTCACTGAACATCTCTCACTGAGATAGGGACAGTGATTAGATAGTTCACTGATTCAGGTCCAAGTGTTATTTCAGCTTATTTGTTAAAATGGTAACCAAACCAACTCTCCTAGTCAGAACCtgataggaaaaaaaacagatcaATACAGTCAAAAGCCTATCTGCATCATTATATGTTGTATTTGTCAGATAATTGTGTGGGACAGTCTCAAAACGTTGTCCACTTGGTGCTCCTAGCTAACTAGCCACACAGCCTGAGTTGACAGAGTAAACGATTACTCTTCTAATTAGTTCCTGGTTTGAGGGGCCAGCCTCAAAGATGGTTTCAAGTCTTCTCTGTTCCATATTGCTTCTGTGAGCCAGCCACTATAAAAGCAGTTGCATTTCATCCCACTGCAGTCAGATTTGTCTTGTTAGATAAcagttttaacattttaaaaaacgaGGCCATTTCTTTCTTCCTATTTAAGTAAACTGTTTTCCCATATATGTATATTCTATGCAAAATAACAAGGTCGACAGCATTATTAAGGCTGTTCTATTATCTGCCCATTCAAATGGACAAACAACCACAAAGCATTGAGGGATGATGTAAGAAGTTAATACTGTGTGATTCTATAAGTCGGAATGCATCTCGGACCATGCTACAATAAATCGTTGGCTTCC

Function

GO: NA

KEGG:

id description
K11799 DCAF4; DDB1- and CUL4-associated factor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249791 lncRNA downstream 399633 15283249 ~ 15288885 (-) True G184452
TU249756 lncRNA downstream 514399 15173711 ~ 15174119 (-) True G184420
TU249753 lncRNA downstream 514878 15169136 ~ 15173640 (-) False G184417
TU249752 lncRNA downstream 514878 15170118 ~ 15173640 (-) True G184417
TU249730 lncRNA downstream 550205 15135469 ~ 15138313 (-) True G184406
XR_005636867.1 lncRNA upstream 1879 15696500 ~ 15700999 (-) True LOC120546341
TU250055 lncRNA upstream 39797 15734418 ~ 15735282 (-) True G184662
TU250061 lncRNA upstream 78065 15772686 ~ 15775486 (-) True G184668
TU250065 lncRNA upstream 97665 15792286 ~ 15792812 (-) False si:dkey-177p2.18
TU250107 lncRNA upstream 317879 16012500 ~ 16015535 (-) True G184696
XM_039781227.1 mRNA downstream 8266 15677870 ~ 15680252 (-) True pigh
XM_039781457.1 mRNA downstream 29027 15653902 ~ 15659491 (-) True vps18
XM_039781456.1 mRNA downstream 36223 15606068 ~ 15652295 (-) True ino80
XM_039782715.1 mRNA downstream 303931 15347760 ~ 15384587 (-) False syndig1l
XM_039782714.1 mRNA downstream 303931 15347760 ~ 15384587 (-) True syndig1l
XM_039781078.1 mRNA upstream 25808 15720429 ~ 15723341 (-) True LOC120546258
XM_039781272.1 mRNA upstream 82802 15777423 ~ 15785606 (-) True chga
XM_039781274.1 mRNA upstream 94205 15788826 ~ 15795638 (-) True si:dkey-177p2.18
XM_039781273.1 mRNA upstream 101150 15795771 ~ 15806849 (-) True sel1l
XM_039781047.1 mRNA upstream 113462 15808083 ~ 15830786 (-) False arhgap18
TU249614 other downstream 1109349 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1190148 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2197390 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 2220453 13458616 ~ 13468065 (-) True fkbp1b
TU249197 other downstream 2472694 13206307 ~ 13215824 (-) False hmgn3
TU250064 other upstream 94293 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 796029 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 1135175 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 2067335 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 2067777 17762398 ~ 17762482 (-) True LOC120547359

Expression Profile