RNA id: XR_005636866.1


Basic Information

Item Value
RNA id XR_005636866.1
length 1773
RNA type transcript
GC content 0.50
exon number 10
gene id dpf3
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15694944 ~ 15719632 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATACCCCTAACTAAACAACTATAGTCATGACAGAGCTCATGATGTTTGATATTCTTATTTCCCATTGTGATGTTTTCactaaaataaagacaaatgcATTTTATTACATGCAATTATTATTACTCTGAGGACTGGGACATTGATGTTGACAGATTTCTCTGAGACCACGCCTAGTGTCTTGATGCTAGTGTTGTATTGGTAGGGCGCACAGTGCCCATGCAGGACCGCATTGGCTGTTGTATTTTTTCACAAGGGTCCCAAACTACACCGAGATTTGGAATATTACGTTACTGCAGGAAAATGGCGACTGTCATTCATAATCCTCTAAAATCGCTTGGTGACCAGTTCTACAAGGAGGCTATCGAACACTGCCGCAGCTACAATGCCCGTCTCTGTGCCGAACGCAGCGTGCGCATGCCCTTCCTGGACTCGCAAACTGGTGTAGCACAGAACAACTGCTACATCTGGATGGAAAAGTGCCACCGCCAGCCAGgccaGGCAGCAGGACAGATGTATACCTACCCTGCTCGTTGCTGGAGAAAGAAGAGGCGACTCCACCCTCCCCTGGATCCCCAGCTCCGCCTCTGTGAGCTTCGACTAGAAGCCGAACTGGCCCCTAAACGCGAGGGGCCCCCAGGGGAGGCCACAGCTTTGGAGGCCCTCCTGAGGGGGGACAGTctgctggagaaaaaaaacaacatatgtaAGGAGGAGGAAACGTTGCTGGAAATACAGAGAGTTCTGGAGGCGGAGGAAAATGGGGACGGTCTCCTTGAGGACGAAGACTTTGACGTGGACACTCCAAAGAGAAAGAACAGAAACAGAGGCAAAACCAGAGGATCCAGTCGCAGGAGGACAGAGCCCGTTAACATCGACGACCAGGACAAACCTTACGTCTGTGACATCTGTGGAAAGCGCTACAAGAACCGGCCCGGCCTGAGCTACCATTACACCCACACTCACCTGGCAGAGGAGGAGGgcgaggaggagaaggaaacaGAGATGGCCCCATCTCCTCCATACAACGCAGACAACCACAAACCTCAAAAGGGCCCAGACGGCAGCATCATCCCCAACGACTACTGTGACTTCTGCCTGGGAGACCAGGACTCCAACAGGAAGACAGGCCAGGCCGAGGAGCTGGTGTCCTGCTCTGACTGTGGACGCTCCGCTGGAAGAGGAGGAGTGAAGAAGAATGGGAGGAAGCCGAGTGCTCTAGAGGAATTGTTCGGCAACACGTCAGACAGCGAGGCCTCCACGTTTCGTGGCTTTGAAGATGCCGAGCTGgaagacattttgttttcagaCGATGATGGTGCTGTGGATGACAGCTGATGACGGACTTCCTGACCACCTGGACatttgaagacatttttttcttGGAAATCTCTGATGGATacaatggcattttttttaacatgctcaGGTGGATTTTACTGTTCAACGCATTAAGTAATTTTTCATAAACCAACAATAATCTCCTTACACTTTAACTATGCTTGCGAAAGATAATCAAGATAGAGACTAAACTTCACGGCCACTTCCTAATTAGTTCTGGACTGAAAAGGTTAGTAGCAGACACAGTGGACGAGAGAAAAAGGAATAAATTACATGAGTGGTCGCTAATGTGGCAGGGGGAGGGATGAACGTGGACTGTTGAGTCACTCCATTGGCTAAAGAGGAGAGGTCACCCCACATGTCTGCAGTTCACTGATAACATGATGCAGGCAGTGAGGACGTACCAGTGGCAGTGCATAGAGTGCAAGTCTTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0016514 SWI/SNF complex cellular_component
GO:0042393 histone binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249854 lncRNA upstream 14785 15678997 ~ 15680159 (+) True G184508
TU249855 lncRNA upstream 39424 15654846 ~ 15655520 (+) True G184509
TU249823 lncRNA upstream 201417 15493204 ~ 15493527 (+) True G184481
TU249814 lncRNA upstream 215864 15478491 ~ 15479080 (+) True G184474
TU249805 lncRNA upstream 372056 15322575 ~ 15322888 (+) True G184465
TU249871 lncRNA downstream 60945 15777229 ~ 15780546 (+) True G184521
TU249880 lncRNA downstream 81531 15797815 ~ 15798794 (+) True G184526
TU249922 lncRNA downstream 173081 15889365 ~ 15889585 (+) True G184561
XR_005636843.1 lncRNA downstream 198302 15914586 ~ 15920914 (+) False LOC120546249
TU249891 lncRNA downstream 198361 15914645 ~ 15921798 (+) True LOC120546249
XM_039781221.1 mRNA upstream 7217 15680461 ~ 15687727 (+) True zfyve1
XM_039782916.1 mRNA upstream 31283 15660670 ~ 15663661 (+) False rhov
XM_039782709.1 mRNA upstream 90778 15602335 ~ 15604166 (+) True chac1
XM_039782510.1 mRNA upstream 97051 15588083 ~ 15597893 (+) True dll4
XM_039780970.1 mRNA upstream 394237 15296616 ~ 15300707 (+) False vrtn
XM_039782619.1 mRNA downstream 13763 15730047 ~ 15738980 (+) True stx7l
XM_039781271.1 mRNA downstream 56376 15772660 ~ 15776217 (+) True ccn2a
XM_039781050.1 mRNA downstream 137526 15853810 ~ 15877749 (+) True tmem200a
XM_039781069.1 mRNA downstream 269799 15986083 ~ 16014859 (+) True itpkb
XM_039781070.1 mRNA downstream 269799 15986083 ~ 16014859 (+) False itpkb
TU249859 other upstream 31370 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 376108 15301925 ~ 15318836 (+) True G184458
XR_005636833.1 other upstream 401692 15289674 ~ 15293252 (+) False LOC120546207
TU249525 other upstream 1165574 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 1313757 14362341 ~ 14381187 (+) True G184231
TU249895 other downstream 198361 15914645 ~ 15968123 (+) False LOC120546249
TU250012 other downstream 683154 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 1049261 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 1109410 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 1577370 17293654 ~ 17295701 (+) True G184996

Expression Profile