RNA id: XM_039781227.1


Basic Information

Item Value
RNA id XM_039781227.1
length 1749
RNA type mRNA
GC content 0.38
exon number 4
gene id pigh
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15677870 ~ 15680252 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AagtaaatttaatatttaattcacTGTGGTTGTTGTAAACACGCAGAACGACGGTGCCCGCACCGTACGTTATTTTTTTACTCTAACAACATCCAACCGAACAACCCGGTGTAAGTAACGAGTGCATCTAATGTGAGAATTGATTGTGACATCAATTCAGTTGCGAGtattcagtatttttcttttgcctcactttttttcttATATTTAACTGGAGAGACTTAGCATCGTATGTATGTaactttatgtatgtatgtaagtatgcATGTATCATTTTCCGTCTAAGAAAGGACTACTTCATGATTTTGAATGCGACTGACCTTGCCTGTTTACAGATAGCCAAAGCTAATTCAGTGCTAACCTTCAGTGTtagcaaagccggtctacggtatattagaagttctttggtgttagctagctggctaagCTAACTGTTTCTGCGAGTTCGCTCTTCCTCTCACGTTACTCTCCCGGTATTTGTTGGGTTCATGATGGAAGATGAAGCCTTCACCGACATTAATGGCAAAAGCATATCTCTGCACTGTCAGAGTCACTCTAGCCTTTGCAGCGAGTTCATTGTCAGCGTCCCCAAAGTGTCCATCGGCAAGGTGATGGTGTACACCTGCTGCGTTTGGCTTTTGGCGTACGCTGTGTTCTTCCTCACAGAGAACACCGCTGTTCTGTCCAGCGCTATATTCATCACCCTGGTTGGCATGATGCTTCACATCCACTTTGTGAAGGTAGACCACGAGTCCCTGCTTGTCATTGGCTCCTTAGGCATACAAGTGTCCTCCAGCTACGCCTCAGGCCGCGAGACCACCACATTCATTGAGATGAGCAAGATCAAGGACATTGTCATCAATGAAGCTATTTACATGCATCAAATCATCTACTACCTTTGTGTGCTGTTGAAGGAGCCTTCAGATCCAGATGCAGTGTCAAGTGTTGTGCCATTGTTTCAGAGTTCGAAGCCAAGGCTGAACTGCTTAGTGAAAGTTTACAAAAGCTGTCAggagattatttcaaagtgctAATGACACACAAGTCTTACATTAGCGGTGTTTATGGTCATGCAGTAtgcttttattatttctttaagtcatttttattttcaattgatTAAAGCAGGTAGTTTTTTCTTTTGGTACATCTTGATTTAATGTACAgtgtatttttcattatttttctcacCTGTATGAATGTGAATGTGACCTGTTGTCTGCTGTCACAATGATTTAATATGTGTAGTTTTTGTTGTGTAGTTACTTGAATAATATGAAAATAGCACTGGTGTTAGACTACTTCTTTAAACCTAAAGAGCCAAACCTTTTAACTGACATTGTATTTAAAGATAGACATTACCTTTTTAACAGTTTCAATTGACTAATAATGCCGATATCTGTATTTTACAAGCATTCCTacactgtatttttttaaatacaaaaatacatttgataAACAAAATGAATATTGTTCCTATTGAAATATTTTCCATCACTGTTAGTTGATGTATGCTTGGGGTTAATGTTTTTGAGGAGCTTTACTTTCCTTCCCCAGTAGGGGGCAGTACCACACTTATCAAACTTTTGGAAATCAGAATCATGAATCGGTTCAGACAAAAGCACTTAAGATGTACCAAAAACAATACACACTTTTTTAATTAACCCTGTGTAGCATAATGCCAACATGAAAATAGTTGTTAAATGTGTAGTGTCAGATGTACAATACATTAGTAAACATAAACATCCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K03858 PIGH, GPI15; phosphatidylinositol N-acetylglucosaminyltransferase subunit H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249791 lncRNA downstream 388985 15283249 ~ 15288885 (-) True G184452
TU249756 lncRNA downstream 503751 15173711 ~ 15174119 (-) True G184420
TU249753 lncRNA downstream 504230 15169136 ~ 15173640 (-) False G184417
TU249752 lncRNA downstream 504230 15170118 ~ 15173640 (-) True G184417
TU249730 lncRNA downstream 539557 15135469 ~ 15138313 (-) True G184406
XR_005636867.1 lncRNA upstream 16248 15696500 ~ 15700999 (-) True LOC120546341
TU250055 lncRNA upstream 54166 15734418 ~ 15735282 (-) True G184662
TU250061 lncRNA upstream 92434 15772686 ~ 15775486 (-) True G184668
TU250065 lncRNA upstream 112034 15792286 ~ 15792812 (-) False si:dkey-177p2.18
TU250107 lncRNA upstream 332248 16012500 ~ 16015535 (-) True G184696
XM_039781457.1 mRNA downstream 18379 15653902 ~ 15659491 (-) True vps18
XM_039781456.1 mRNA downstream 25575 15606068 ~ 15652295 (-) True ino80
XM_039782715.1 mRNA downstream 293283 15347760 ~ 15384587 (-) False syndig1l
XM_039782714.1 mRNA downstream 293283 15347760 ~ 15384587 (-) True syndig1l
XM_039782806.1 mRNA downstream 401291 15272178 ~ 15276579 (-) True slc25a47a
XM_039781222.1 mRNA upstream 8266 15688518 ~ 15694621 (-) True wdr21
XM_039781078.1 mRNA upstream 40177 15720429 ~ 15723341 (-) True LOC120546258
XM_039781272.1 mRNA upstream 97171 15777423 ~ 15785606 (-) True chga
XM_039781274.1 mRNA upstream 108574 15788826 ~ 15795638 (-) True si:dkey-177p2.18
XM_039781273.1 mRNA upstream 115519 15795771 ~ 15806849 (-) True sel1l
TU249614 other downstream 1098701 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1179500 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2186742 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 2209805 13458616 ~ 13468065 (-) True fkbp1b
TU249197 other downstream 2462046 13206307 ~ 13215824 (-) False hmgn3
TU250064 other upstream 108662 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 810398 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 1149544 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 2081704 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 2082146 17762398 ~ 17762482 (-) True LOC120547359

Expression Profile