RNA id: XM_039781273.1


Basic Information

Item Value
RNA id XM_039781273.1
length 4477
RNA type mRNA
GC content 0.47
exon number 21
gene id sel1l
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15795771 ~ 15806849 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAATAGGAAGTGTCGATCAGTAGTAAGGGCTTAATATGGCCAGCTAAGTAGTATTTGGTTAATACAAACCTAGTATTAAAACCGAAGTCGAAAGCTTTTGCATGTCGCTGTTAAACTCGGAAGTTTTGAAATATCAAGAGGTATTAGGCAACCATTTTTTAGACCGAGCAGTTGCGTCTCTTTCAAGTATTGAGCTGTGTGGTTGGTCTTTTGTGCGGCTATGTAACGTTAACACTAGCTAgcttgttagctaacgttaacgtaaaACGTCATTCACCCAGCTAGCGTAGCTTTGCATGTGTTAGCTTGTTTGACAGCTACAGTAGTCAAATCAACTAACTAGCTACTATTATCCAGAGAAGATACTGTTCCGTTTAGttgagcgtgtgtgtgagtttatTTATGCAACACTAGTGTGACTCAACTGTAACTGGATGTTGGGTGATAGAAATAGCAGCAGCTACAGCTAGCAGATTGTTAGCTTtgtcaacatcaacaacaatgGGCTATCAAAGATATATAAATACAGCaaggaagttttattttttgaccATTCTGCTGATACTCTTCGTCAAAGGAATAACCGCTGATGAAGAGCAACACGGCAATGACGGACCAGAGTTAAAGTCTTACCATGATCCAGACTCTGAAGAAGAAGACATCCGTCTGGCATCAGGAATTGTGGCTGGGGGTTCTGTGACCTCTGGTCATGAAGTCTCCCAGGCAGAAGAGGAGAAACAGTCACATGGGGATGGactggagggagaggagaaggaggaccTGCCGGAGCAGCCTCCCCCAGTTGAGGAAAAACCTAAAGAGGttcCTGTGGTGAATGGAGGTACAGACCATGGAGAGCCCTGTATCTTCCCATTCCTCTTCCAGGGGAAGGAGTACTATGACTGTACCACTGATGGACGGGGGGATGGACGGCTGTGGTGCGCCACAATCTACGACTACGACCAGGAGAAGAAGTGGGGTTTCTGTGAGACGGATGAGCAGGCACAGCAGAGACTGCAGGCAGAGGAGGTTGAGGAGCAGTATCAGACTGTCCTACGCATGCTCAATGCCACCACCAGGAGGGCCCAGAAGAAAgaATTATACGAAAAACTGCTGAAAGTATCAGAGAAAGGCCACCAGAAAGCCATGGAGAAGGTGGCGTATGCCATGCTGTTTGGAGACTACATGAACCAGAACGTCACTAAGGCCAAAGAAATGTTTGAGAAGCTGGCTATGGAGGGCTCGCCTAAAGCTCAGATGGCTCTTGGCTTTCTGTACGCAGCAGGACTTGGAGTTAACTCGAGTCAGGCTAagGCCCTGGTTTACTACACCTTTGGGGCACTGGGTGGAAACTTGGTAGCTCATATGATCCTGggctACAGATACTGGGGAGGTGTCGGTGTTCCACAGAGCTGTGAGTCAGCACTAACCCACTACAGGCTTGTGGCAAATCAGGTGGCCAGTGACGTGTCCCTGACGGGGGGCTCAGCGGTGCAGAGGATCAGGCTGCTGGATGAGGTGGAGAACCCAGGATCTACCAGTGGGATGTTGGAGGAGGACTTGATCCAGTACTATCAGTTTCTTGCTGAGAAAGGAGATGTCCAGGCTCAGGTGGGTTTAGGTCAGCTTCACCTACATGGAGGACGTGGCGTAGAACAGAATCAtcagAGGGCGTATGACTACTTCAACCAGGCTGCAAATGCAGGGAATACACACGCTATGGCTTTCCTCGGCAAGATGTACTCCGAAGGCAGCGAGTATATCCCTCAGAACAACGAGACAGCCCTGCAGTACTTTCAGAAGGCCTCTGACTTGggTAATCCAGTGGGACAGAGTGGCCTGGGCATGGCCTACCTATATGGAAGAGGTGTCGCCGTGAACTATGAGCTGGCACTGAAATACTTCCAGAAGGCAGCCGAGCAGGGCTGGGTGGACGGACAACTCCAGCTGGGCACCATGTATTACAATGGCATTGGTGTGAAGCGTGATTACAAGCAGGCACTTAAATTCTTCAACCTGGCCTCACAGGCTGGCCACATCCTGGCTTTCTACAACTTGGCCCAGATGCATGCTACTGGTACAGGTGTTATGCGCTCCTGCCACACTGCTGTGGAGCTTTTCAAGAACGTGTGTGAACGTGGTCGCTGGTCAGATCGTCTTATGACGGCCTACGGCAGCTTTAAGGAGGGTGAGACAGACGCTGCGCTGGTCCAGTATCTGCTGCTGGCTGAGCAAGGCTACGAGGTGGCCCAGAGCAACGTGGCCTTCATTCTGGACCAGAAAGGAGTAAAGATCTTCAGTGAGAATGAGACCTACCCTCGTGCTTTACTCCACTGGACAAGAGCTGCAGCACAAGGTTACACTGTGGCCAGGATAAAACTAGGGGACTACCACTTCTACGGCTACGGGACAGATGTGGACTATGAGACCGCTGTCATCCACTACAGACTGGCATCAGAGCAGCAGCACAGTGCCCAGGCCATGTTTAACCTGGGTTACATGCATGAGAAAGGCCTGGGCATCAAACAGGACATCCATTTAGCCAAGCGTTTCTACGACATGGCCGCTGAAGCCAGTCCTGATGCCCAAGTCCCAGTTTTTATGGCCCTGTGCAAGCTGGGCCTGGTTTACACTCTGCAGTACCTGCAGGATTTTAATTTAAAGGACCTGATTTCTCAGGTGGACCTGGACCAGCTTCTGGGCCCGGAGTGGGACCTCTACCTCATGACCGTCATCGCCCTGTTGTTAGGCACAGTCATCGCCTACAGACAACGCCAACACCAAATCATAGTTCCCCCTCGCCCACCGGTCCCTGCCCCAGCGCCCCCTCCTAGACCGCCTCAGGAACAGTCCCCAGCCCAGGCCGAACCCCAGGGACAGGGAGAAACACAAGCCCAGGGCCCGGcccaggaggaagaggagcagcagtGAGAGGAAGCCAGACGGAGCAAGGGCAGTGAAAGACCGACAAGAGGCTCTGCCAGCTGCCCCATGGAGCAGCTGATGCTTACTAGCTGAATACCTGCTAGTTTGAGCACCTCTCCTACTCCACATGCTAAAAGAAGACTGAGGTGGCTGCTGAACTGTGCAGTCTCACATCTCCCTTTCTCCATTTAAAATATATGCTGGTCCTGGGCTGAAGAAAGACACTGGGGGTGTTTACCGACAATGCTACAGAACACAGACTTGGGACTTGCTAGTCTGTGACTCAGGATACTGCCAGAAGCACCCGTGTCCTCACCATGGAAATAGCCTTTTGCTTGCGAAATCAAAGGCTTTTTGGATTTGACTAATCAACATAGTCAAAAGAGTTGGAATCTAATATGTGCTTTAGTTTCTTCCTATTTCTCTTATTGAGAAAATCACTCTTAAGTGGAACTGCCTCAATCCTAGTTTAGCGcagtatttagaaaaaaaatcggGCAGGAAAATGTGAATTCAAATACTTTTATTTGCTAGACCCGGTCTAGTTGGTAAAGCAAGTCAtggttttgcatgtttttttctgctcatTTTGCAGACTTTAATTTTAGGCACCTTTTTTTTCAGATACTTGGGTGAACAAATCTTGCATTACCTTTTCCATTAATTGGTTATTTGTTTAGTTAATATGTCGGTTCTGTACCTTTTTCATACCTGCAATTCACTGAGAAAGATTAATTCATGTTCCTTCAGCATTAGTAACAGtgctaaaatgtaatttaagtcAGTATAATGAGAACAGATACCTGTTTAGTGGTTTACAGTAATCTATGAAAAAGCTGTACTGGATAGATAAAGCCACTAAGCTCTCACCAAATCCTCAGCCCTGATGCAGATTCTGTTTAAAAATGCATACAGACACATCTCCAAGCATAGCCTGATCTGTAGGATGTATACAGTCCAGTGGAAGGAAAAGAACAGTTTTGAAGATGTACTTTTTGTTGGTGGGATATTTTCCCATCAACAGGCTTTGATTTTATTCTAGTGGTTGGTAGCTCAATAGTTCCTCTCATCCCAcatctgccttttttttgttttgtttattaagCCTCAAGTTAGCTGAGACAGTGCGTGTGTGGCTGTGGCATGTGGCTGTTACGAGAATTTCCACCCACTCACCAAAAATCCAACTTGGATCCCTGCCTACACTTTGCCATGGTTAGGCCATACAGTATTTATCAAAACAAAATTAGAAACTTCAGATTTTGCCACATGCAGTTTTTCGCCTCTAAAGTCCATTTGTTCAGTTCCACGATATATGCTTGTTGTTAGAACTATTGAGAATTGATCTCCCGATACGTCTGCATGTAGTGTATGAAGTCAAAAAGGAAACAATCAATGATTCCAAACTGTTTCCTGCATTCACACATCAACACCCACACTACTCACAATTTGTCTAAAATGAATCACTGGTCAAGATTGTTGAGAAGACTGCATTTTTACCATCCTAAATACAAGTttataaagaaataataaatgataTATGGATATTTAA

Function

GO: NA

KEGG:

id description
K14026 SEL1, SEL1L; SEL1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250065 lncRNA downstream 2959 15792286 ~ 15792812 (-) False si:dkey-177p2.18
TU250061 lncRNA downstream 20285 15772686 ~ 15775486 (-) True G184668
TU250055 lncRNA downstream 60489 15734418 ~ 15735282 (-) True G184662
XR_005636867.1 lncRNA downstream 94772 15696500 ~ 15700999 (-) True LOC120546341
TU249791 lncRNA downstream 506886 15283249 ~ 15288885 (-) True G184452
TU250107 lncRNA upstream 205651 16012500 ~ 16015535 (-) True G184696
TU250117 lncRNA upstream 218369 16025218 ~ 16033730 (-) True G184699
TU250122 lncRNA upstream 230901 16037750 ~ 16042215 (-) True G184702
TU250125 lncRNA upstream 257822 16064671 ~ 16064914 (-) True G184705
TU250126 lncRNA upstream 259909 16066758 ~ 16068271 (-) False LOC120546224
XM_039781274.1 mRNA downstream 133 15788826 ~ 15795638 (-) True si:dkey-177p2.18
XM_039781272.1 mRNA downstream 10165 15777423 ~ 15785606 (-) True chga
XM_039781078.1 mRNA downstream 72430 15720429 ~ 15723341 (-) True LOC120546258
XM_039781222.1 mRNA downstream 101150 15688518 ~ 15694621 (-) True wdr21
XM_039781227.1 mRNA downstream 115519 15677870 ~ 15680252 (-) True pigh
XM_039781047.1 mRNA upstream 1234 15808083 ~ 15830786 (-) False arhgap18
XM_039781045.1 mRNA upstream 1234 15808083 ~ 15829802 (-) True arhgap18
XM_039781046.1 mRNA upstream 1234 15808083 ~ 15829801 (-) False arhgap18
XM_039781048.1 mRNA upstream 1234 15808083 ~ 15829581 (-) False arhgap18
XM_039781049.1 mRNA upstream 24930 15831779 ~ 15839516 (-) True fkbp6
TU250064 other downstream 4213 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 1216602 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1297401 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2304643 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 2327706 13458616 ~ 13468065 (-) True fkbp1b
XR_005636881.1 other upstream 683801 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 1022947 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 1955107 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 1955549 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 1955884 17762733 ~ 17762808 (-) True LOC120547353

Expression Profile