RNA id: XM_039781294.1


Basic Information

Item Value
RNA id XM_039781294.1
length 2101
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC120546368
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22481920 ~ 22484901 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTTACCTTTACTGCTGTTAATTAGTAATGACTCATTACCCCATGCACATTTCACTCCTTGATATCTTTATTGCTGCAGCTGGTGACACGCGCTACCTGCTACTCAATAAACAAAATGATGGAAGTATTTTTCATGCAGCACGTGTACTGGCATTTTGAGGTGAAGAGAGATGGTTTACTCATCAAATGATAActgattttctttcttctctgacATTTCAGACTCCATCGTAATCGGCTTCTGGGTTGGACTTGCTGTGTTTGTCATTTTCATGTTCTTTGTGCTCACTCTGCTCTCAAAGACAGGAGCGCCACATCAAGAAAACCCAGACTCTGCTGAAAAGCGCCATCCACCAAGCAGCTGTCTAGTAGACATCCACACTCCTCAGGACGAAAATGACAAAGCCTTCTCTCGTCCGTTGTTAACGGGGTCTCGTTCTTATTTTCATTTCTACATTAATAACGAGGAGGATCAGCGTCAGGGGAAGCAAAACCCAGAGGACAAGAGAGTTGGAAAGCACAGCGGGGCGCGAGCCCAGCAGCGGACCAGAGGAATCAGCTCCTCTGGGATGGATGAGATGGAAGAGGATGTTGAGGAAGCTGAGGGACACCAACCTCTCAGGGGACTAATAGAGGAGAGTCAGGCAGACAGAGAATGTTCCTTCTTTTCCCACTTCAACATCCCTAACTTTGTGAACTTGGAGCACAGTTCAACACTTGGAGAGGATGATCTGCTATATGAGCCCTCTGTCATACTGGAGCGCCAGTCTCAATCTCAGGATGCTCACCGTGACATCCACTGAGTCTGTTTATACGAAGACATCACAGGCATGGACATAGTGTTATTGTTAAATTACATGGCCATTTGTGATCTGAtggggaaaacacacacacgtctgaCACACAGCTACCTTTTTTCCTAAAAAGTGTCTCTTCTTGGAGAGTTTTAGCCTTTTCAGGGAGCATACATGTAGATCAACAAGCAAAAGGGCAAAATTCCATACTAAGTGTAACTCAGTTATAAGATGAGATTTATTCCTGAATGTAAAATTGCCTCTCAAATGGTACGCTTTACTGTGAGTACTAGGTTACTCTGAAATGGATGCAGCTGTATTGTGCCTGGACTAGATGTCTTTCCAAACAAAATGAGAGGAGTGGCTCACCAGGGAGAGATGCTTGGTACAATTAATTCTGCTATTATTGCTGTCTTGCTTTCTTGTGCAGTTCCGTACAATGGACATTATCTCCCCAGCAGGACACGGATGCCAGATTAAAAGCATGGAATTCAATAATGTTTGTTCTAAAATGAAATACCCTCTATTAGAAAAGGTGAAATGTACTTTAACCGTGGGATTAGTACCACAAAATCAAACGTATCATTACAGGGTAGGTAACCTAAGACCTTGGATGACAATGTGATATAATACTTTTGTATTACTATGAACATAGTGGAGGGATATAGCAACTAAAGAGCCACACATTTCCTTTAGGAGTTGGAGCTGAAAGGTAATGactcaaaataaatgtttatattgCTCCGTATTTACTGGATATGTAAAGTAAGTATTTGCTAACACATGTCAACTTCAAGTTGATAATATGTCAATGTGGTGTttcaagtggccaaaaaatgaatgaatgcaggTTTGAGTCTTCAGACAGTGTAGCAGAATATCTGTATTTATAGGAGCACTTGTGTAAAAGGATTAAATTAAAGTGATGTTTGGAATTGTCCTTATTTGTTGATAATATATTTAATGTCTATGTAGATTTGAGATAGGGAATAAGACATACAAACTGTTTTACTAAGCAGTGCTGCACTCCGGTCTGGGTCTTAATTCATGTAGAAATCAAATTTGAAAAACACAGCCCATTAACAGGACGTGTCAGGGAAAATAAATGTTCGAGCTCAGTCTTCTGTCCTCTGACATAGCTCATGTTCTTAAAAAGGTGGGCAGGTGGGACCAGGCTGAAATGTGATTAGCTAGTTTCTGAGAAATATTGGCAGGGAAGGCTTTCACAATTTAGTCAGTGTTCTTTTTTCTGTACCAAGCGCACCAACAAGGAAATTATATGCTCTTGTtttttctgaaataacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252572 lncRNA upstream 180437 22300784 ~ 22301483 (+) False lin28b
TU252574 lncRNA upstream 187223 22294442 ~ 22294697 (+) True G186452
XR_005637027.1 lncRNA upstream 648138 21832948 ~ 21833782 (+) True LOC120547080
XR_005636932.1 lncRNA upstream 735366 21745581 ~ 21746554 (+) True LOC120546760
TU252261 lncRNA upstream 939139 21540588 ~ 21542781 (+) True G186297
TU252644 lncRNA downstream 50758 22535659 ~ 22537716 (+) True G186506
TU252735 lncRNA downstream 232069 22716970 ~ 22719893 (+) True G186578
TU252803 lncRNA downstream 314834 22799735 ~ 22800058 (+) True G186622
TU252810 lncRNA downstream 324319 22809220 ~ 22809461 (+) False kcns3b
TU252843 lncRNA downstream 361971 22846872 ~ 22847674 (+) True G186641
XM_039781018.1 mRNA upstream 31856 22438721 ~ 22450064 (+) True LOC120546233
XM_039781019.1 mRNA upstream 31856 22438721 ~ 22450064 (+) False LOC120546233
XM_039781020.1 mRNA upstream 31856 22442021 ~ 22450064 (+) False LOC120546233
XM_039782705.1 mRNA upstream 180335 22280967 ~ 22301585 (+) True lin28b
XM_039782707.1 mRNA upstream 180335 22280967 ~ 22301585 (+) False lin28b
XM_039781291.1 mRNA downstream 4145 22489046 ~ 22515691 (+) True LOC120546366
XM_039781290.1 mRNA downstream 5773 22490674 ~ 22515691 (+) False LOC120546366
XM_039781292.1 mRNA downstream 5773 22490674 ~ 22515691 (+) False LOC120546366
XM_039782495.1 mRNA downstream 56505 22541406 ~ 22553765 (+) True LOC120547088
XM_039782497.1 mRNA downstream 56505 22541406 ~ 22553765 (+) False LOC120547088
TU252499 other upstream 416331 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 534920 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 2621715 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 2833764 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 2942712 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 1093477 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 1093477 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 1594702 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 2022012 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 2519118 25004019 ~ 25009407 (+) False lama2

Expression Profile