RNA id: XM_039781299.1


Basic Information

Item Value
RNA id XM_039781299.1
length 3325
RNA type mRNA
GC content 0.48
exon number 17
gene id tmem214
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 26860070 ~ 26878578 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTAAATGATCTTTTGAGTAGAGTCGTCCTGTTTCATTCAGCAGGGAGGAAGGAGGCAGTCGCGGTATCCCCGACCTAATAAGACCCCATCTGAAACTGAAACATGGCTTCAAATAATGGCTCAGTCGGTAAATGGGAGGTAGTGAAGAAAGGGAAGAAAAATAACAGCGCAGGAGGAGGCAAGAACCCGAATGACAAGAAACCCGGCGGCGGCGTCGGGGGAAGGAAAGCCCTGGGCGAATCTAACCAGCCATCCAGACCACCCCTGAAGATGTCAGAAACGCTGTTTGACGGCTTTGAGAAGATGGGAAAGAAACAGAACAAGGAGCAGGTTCCACCACCAGCCGAGCCCGAAAATAAAAAGACCTCATCAAGTAAAGCGTCTAAGAAATCACAATCCAGCAGTCCAGTAACCCCCGCAACTCGCAAGACCCTCGAGGAAGCCTTCAAAACATTGGATGTTGGGGACCTGAAGCAGCAGTTGGCTCGCAGTCAGACCCTGTTTCCAGAAAACCCATCAGTGTGGGTCAAAGACCTGGCTGGATACCTCAACCTCAATCTGGCTGCGCCTGAGCCTGAGCCCACACTCAGCAGCTATGCTCACGACTACCCATACTGCCTTTCAGGAAAAGAGCTGAAGGGTGTGATCAAAGGCCTCATCGGACGCTGCAGTGACATTGTGCCAGATTTCTTCGACCACTGTGTTTATACCATGCTCAGGGAGATGGACAGGCAGTCAGGAGAATCTCTGCATGGCTACAGACTTTGCATCCAGGCAATCCTACAGGACAAACCCAGGATAGCGAGCCAAAACCTGCCAGAGTATTTGGAATTACTGCGATCGGTTCAGAATCGTCCAGTGAAGTGTTTGACCATCATGTGGGCTCTCGGCCAAGCTGGATTCTATGACCTCAGCCAGGGACTCCGAGtgtgGCTGGGTATCATGCTTCCTGTGCTGGGAGTGAAGTCCTTGTCATCATATGCCATTGCATATCTGGAGAGACTTCTCCTACTTCATGCGAACCTAACAAAGGGATTTGGCATCATGGGTCCTAAGGAGTTCTTTCCGTTACTGGATTTCGCCTTCATGCCCAAGAACGCCCTGTCATCAAGtCTGCAGGAGCAACTGAGGCGTCTGTACCCTCGACTGAAGGCCCTCGCATTTGGAGCCAAACCCGAGAGCACATTACATACATACCTGCCATCATTTCTGTCCAGAGCGACACCACACTGTCCAGATGACATGAAGAgagagcttCTCAGCAGTATgactgagtgtttgtgtgtagatGTACAGAGTCTAGGAGTGTGGAGACAGCTCTATACCAAACACTTACCCCAGTCCAGTCTGCTGTTGAACCATTTATTAAAGTCCTGGAATATCCTGCCACCAAAGCTTCGGAAGAACCTTGAAGAAACAATCCAGTCTTTCAGAGTGACCAACGAAGAGATGAAAGATGTCATCGAATCTCAGGAGCTTCAGGACTGCAACAACCTGTGCCAGAATCTGCAGGTAAAGATGCGCGGTCGCGGGTTCCCCTGGTCCAAACTGCTCATGGTTCTGCTCGTGTTTGCTGCAGGCTTCATCGCACATGACGTCAGATCTCACGGTTCCTTCAAAGATTCCACCACAGCCATGTATCTGCGCAACTCGGGGGTCACAGCCGTATCTCAGCAGGCCTGGAGCAAAGTAAAGGTCTACTCTACACAGGCCTTCAGCTGGTTGGAGACCAATACTCCTTATTATTACTCTGAGTGTGCGCGGGTTTTGGGGCCACTAATGGACCAAGGTttggaaaagacaaaaacagcagCCATCTTCATCTCTGAAAACACCACGCAGTTTATCCTCTGGGTCAAAGAAAAGACACCGCAGGCCATAGAATGGGTGAACACCAACACTCCTGACAGTGTGTTCCAAGTGTTGGCGTATTTAAAGGCGctgctcctctccctccatCAGAACTACATCCTGCCAGCGCTGGCTTACATATCTCAACTGCTACAACGAGCGTGGACCCACCTACAGGACTCCTGCAACGGTGAGGTGTCTGTGTCGTGTCTGCAGGGACACGCTCTGTCCTTCACCAACTCAACGTGGCAGCTGCTCCAACACACGACGTCGGCCATCAAGACGTGGGCTCAGGAGCTGCTGACACGAGCGTGATGACGTCACAGATGCTGACTAATTTACACACTCGCAAcgcacacaatatacacacatgaAGTTATTTACAGACACCCACTGGCCCAATCTGAGGCTGCCTTTCAGTGCGTCGGCTCCCCTCTCAAGCCGTGATTGGACACTGTGGGGTCAGACAAACAAACTCTCACTCAAAATGACCCTTCTATCTCTTATATTTCTTGTTTTGGCTCAATTTTTGTAATCGGTTTGCTGTTGTacaatgtatttttcttttttttctaccaatcTTTTTGTCACTGCTGGACGCAGAggtcgtctctctctctctctctctctctctctctctctctctctctgtctctctctgtctctctgtctctctgtctctctctctctctctctctcacccccccTCCCCTGAGTTTTCTACTGCAAATTTCAGCTGTTGCTTTTAACCTTTGGGTTAAACAGATTGTGTAATTTATAGAAAATGTAGGTTTGTAGATGATTTATaaacaatttttatttaaagatatataaaaaaaagtgttgtatGAAAACTTAAAGGGCAGggaaaagaccaaaacagaaacattgtgtgtgtgtgtgtgtcaggctcAGTAAAGCCTTCGTCAAACCTGAGAATCTGTCCAGTGGGCAGCTCACAATGTAAAGCCTTCACTAGGAAAGATATTGTGGGTAAAGGGTCACATCTACCAGTGGATTAACTCCTTTAGAAAAAGAGTTGACAGCATTAAGGAGTCTCACATCCATCTTAAAAGGTCCAGAAGGAGAAAGCTACCGTCTTGTCCTTTCTGCACATCTCCTCATCTTGTCTTTGCTGCTTCGtcatctgtctgctgtttgccaGTCGTGTACTCACACTTAAAGGCTGAagatattctgtgtgtgtgtgtgtgtgtgtgtttgtgtgcgtgtctaCATGGATCAACAAGCTTATTCTCAATAATGGGATCATGGTTAACCCCGTGCCAACGTCCTCCTGTATGCCAGAATTTGACTAAGAATAAACCCTCTCGTCTGGCCAAGGCAAACATTTCTGACCAGCTGGTTCACTAACCCTTCATTGTaaacaatactgtatgtttggATGGATACGGCAATGACTAATGTCTTAATTTGTAATGTAAATGATTTATAATAAAGACTTCAACCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254075 lncRNA upstream 428799 26430569 ~ 26431271 (+) False tfap2d
TU254064 lncRNA upstream 535336 26324516 ~ 26324734 (+) True G187536
TU254063 lncRNA upstream 544416 26315122 ~ 26315654 (+) True G187535
TU254024 lncRNA upstream 587475 26272368 ~ 26272595 (+) True G187508
TU254021 lncRNA upstream 599176 26257495 ~ 26260894 (+) False atp5mj
XR_005636872.1 lncRNA downstream 868 26879446 ~ 26885536 (+) True LOC120546372
XR_005636870.1 lncRNA downstream 2143 26880721 ~ 26885536 (+) False LOC120546372
XR_005636871.1 lncRNA downstream 2143 26880721 ~ 26885536 (+) False LOC120546372
TU254247 lncRNA downstream 9129 26887707 ~ 26888304 (+) True G187672
TU254272 lncRNA downstream 38114 26916692 ~ 26918285 (+) True G187692
XM_039781614.1 mRNA upstream 3177 26843772 ~ 26856893 (+) False LOC120546589
XM_039781615.1 mRNA upstream 4568 26843772 ~ 26855502 (+) False LOC120546589
XM_039781616.1 mRNA upstream 7096 26843772 ~ 26852974 (+) True LOC120546589
XM_039781617.1 mRNA upstream 7096 26843772 ~ 26852974 (+) False LOC120546589
XM_039781618.1 mRNA upstream 17516 26833707 ~ 26842554 (+) True LOC120546590
XM_039781302.1 mRNA downstream 17802 26896380 ~ 26905243 (+) True esco2
XM_039780992.1 mRNA downstream 149527 27028105 ~ 27036677 (+) False LOC120546215
XM_039782373.1 mRNA downstream 194392 27072970 ~ 27407359 (+) True LOC120547023
XM_039781427.1 mRNA downstream 594638 27473216 ~ 27478075 (+) True c18h1orf131
XM_039781428.1 mRNA downstream 594638 27473216 ~ 27478075 (+) False c18h1orf131
XR_005636892.1 other upstream 132525 26695430 ~ 26727545 (+) False LOC120546586
unassigned_transcript_1084 other downstream 955 26879533 ~ 26879621 (+) True trnay-gua_55
unassigned_transcript_1085 other downstream 1583 26880161 ~ 26880233 (+) True trnaa-agc_21
unassigned_transcript_1086 other downstream 8556 26887134 ~ 26887206 (+) True trnaa-agc_22
unassigned_transcript_1087 other downstream 11706 26890284 ~ 26890356 (+) True trnaa-agc_23
unassigned_transcript_1088 other downstream 103143 26981721 ~ 26981793 (+) True trnat-cgu_2

Expression Profile