RNA id: XM_039781309.1


Basic Information

Item Value
RNA id XM_039781309.1
length 846
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC120546382
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 8572403 ~ 8573320 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAAAGGCAACCCTTCTGcaatgtgtgttttattgtatattttcctTGGCTCATTATCTGTTGTCACAGTATGTGGAAACCTTCTTGTAATAATCTCCATAATCTATTTCAAACAGCTCCACAGTCCTACTaactctctcattctctctctggctgtggCTGACCTGCTTgttggtgttgtagtttttcctgTCAGCATGGCATTTACTGTAACCTcgtgtttttattataaaaatatattttACAGATATTATGCAGTGTGTCAGCCTCTGATGTACAGAACTAAGATAAATGTTAACGTTGTCATGGTCATGATCCTGCTCAGCTGGGGTGTTTCTGTTCTAATTGCCATTGGCTTTATGATTCCAgatttaaaacatgaaaaatgtgaAGAAAATTGTTTTATTGATGCCCTACTTGCAAACATTTTGGGACCCGTCTTCGCATTTTATCTACCAGTGATTGTAATGCTCTGTATCTACCTAAAGATTTTCCTTGTTGCACAGGAACAGGTACGCAGCATCCAGAATAACACCTGTCAGAGTAAAAAGTCTGGAGCAACTGTCAGTAAGATGGAGAGAAAGGCCACTAAAACTCTTGCGACCGTTTTGGGAGTTTTCCTGATGTGTTGGactcctttctttctctgttttatcTCTCAGCTTTTGCCCCATGTGTCAGTGCCACTTCCATTGTTTGAAACACTTAACTGGCTTGCACTGTTAAACTCCATGCTCAAtccatttatttatgcattCTTTTACAGCTGGTTCAGATCAGCTTTCAGAATGATCGTTTCTGGGAAAATATTTCAAGGTGATTTTTctaacacaaaactgctttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247940 lncRNA downstream 93057 8478912 ~ 8479346 (-) True G183042
TU247873 lncRNA downstream 140729 8431362 ~ 8431674 (-) True G183027
TU247857 lncRNA downstream 326638 8245565 ~ 8245765 (-) True G183013
TU247850 lncRNA downstream 380929 8191178 ~ 8191474 (-) True G183006
TU247822 lncRNA downstream 522418 8049578 ~ 8049985 (-) False opn5
TU247969 lncRNA upstream 197968 8771288 ~ 8771585 (-) True G183068
TU248059 lncRNA upstream 425255 8998575 ~ 8998828 (-) True G183136
TU248075 lncRNA upstream 447659 9020979 ~ 9024565 (-) False LOC120546609
XR_005636853.1 lncRNA upstream 525051 9098371 ~ 9099326 (-) True LOC120546288
TU248114 lncRNA upstream 553401 9126721 ~ 9129230 (-) True G183175
XM_039781307.1 mRNA downstream 6262 8565143 ~ 8566141 (-) True LOC120546380
XM_039781306.1 mRNA downstream 12933 8558469 ~ 8559470 (-) True LOC120546379
XM_039781305.1 mRNA downstream 22223 8549179 ~ 8550180 (-) True LOC120546378
XM_039781890.1 mRNA downstream 231656 8251716 ~ 8340747 (-) True LOC120546734
XM_039781310.1 mRNA upstream 14022 8587342 ~ 8588259 (-) True LOC120546383
XM_039781312.1 mRNA upstream 31364 8604684 ~ 8605599 (-) True LOC120546385
XM_039781313.1 mRNA upstream 46439 8619759 ~ 8623728 (-) True LOC120546386
XM_039781314.1 mRNA upstream 77938 8651258 ~ 8652127 (-) True LOC120546387
XM_039781315.1 mRNA upstream 87123 8660443 ~ 8661312 (-) True LOC120546388
TU247804 other downstream 547359 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 806017 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 1539001 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 1540680 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1030 other downstream 1542357 7029974 ~ 7030046 (-) True trnak-uuu_19
TU247995 other upstream 210468 8783788 ~ 8787217 (-) False LOC120546397
TU248116 other upstream 556253 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 1526283 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 1928600 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 1947397 10520717 ~ 10521410 (-) True G183528