RNA id: XM_039781316.1



Basic Information


Item Value
RNA id XM_039781316.1
length 798
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC120546389
representative True

Chromosome Information


Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 8675816 ~ 8676685 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATGTTATTGTCTGTTATCACAACATGTGGAAACCTTCTTGTTATAATCTCTGTATTTTACTTCCAACAGCTCCACACTCCTACTAACTACCTTATTCTCTCTCTGGCTGCGGCTGACCTGCTTGTTGGGATCATAGTCTTTCCTTTCAGCATGGCATTCTCACTAAGCTCATGTCTGTATCATGAGGGTTTATTTTACAGATATTATGCAGTGTGTCAGCCTCTGACCTATAGAACTAAAATAAACCATTGTGTTGTTCTGAACATGATTGTGGGTAGCTGGGGGGGTTCTGTTCTAATTGCAATAAGCATCACAGTTGCTGGATTAAACAATGATAAATGTGGGGAAAGGTGTTTGATTGATGTTCTCATAGCAAACACTATTGGATCTATTTTATCATTTTACCTCCCAGTGATCATAATGCTCTGTATCTACCTAAAGATTTTCTTTGTTGCACAGAAACAGGCACGCAGCATCCAGAACACAACCTGTCAGAGCAAAAAGTCTGGAGCAACTGTCAGTAAGAATGAGAGAAAGGCTACCAAAACTCTGGCTATCGTTTTAGGagtctttcttttttgttggactcctttctttctttgtatcACTGTTTTGCCTTTCAGTAATGACTCAGTGCCAGTTCCTGTGATTGAAACACTTAACTGGCTTGCACTGTCAAATTCCATGCTCAATCCCTTTATTTATGCTTTCTTTTACAGCTGGTTCAGATCAGCTTTTAGAATGATCATTTCTGGGAAAATATTTAATGGTGATTATGCTAATTCTAAACTGTCTTAa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU247940 lncRNA downstream 196470 8478912 ~ 8479346 (-) True G183042
TU247873 lncRNA downstream 244142 8431362 ~ 8431674 (-) True G183027
TU247857 lncRNA downstream 430051 8245565 ~ 8245765 (-) True G183013
TU247850 lncRNA downstream 484342 8191178 ~ 8191474 (-) True G183006
TU247822 lncRNA downstream 625831 8049578 ~ 8049985 (-) False opn5
TU247969 lncRNA upstream 94603 8771288 ~ 8771585 (-) True G183068
TU248059 lncRNA upstream 321890 8998575 ~ 8998828 (-) True G183136
TU248075 lncRNA upstream 344294 9020979 ~ 9024565 (-) False LOC120546609
XR_005636853.1 lncRNA upstream 421686 9098371 ~ 9099326 (-) True LOC120546288
TU248114 lncRNA upstream 450036 9126721 ~ 9129230 (-) True G183175
XM_039781315.1 mRNA downstream 14504 8660443 ~ 8661312 (-) True LOC120546388
XM_039781314.1 mRNA downstream 23689 8651258 ~ 8652127 (-) True LOC120546387
XM_039781313.1 mRNA downstream 52088 8619759 ~ 8623728 (-) True LOC120546386
XM_039781312.1 mRNA downstream 70217 8604684 ~ 8605599 (-) True LOC120546385
XM_039781310.1 mRNA downstream 87557 8587342 ~ 8588259 (-) True LOC120546383
XM_039781317.1 mRNA upstream 38880 8715565 ~ 8716434 (-) True LOC120546390
XM_039781318.1 mRNA upstream 46418 8723103 ~ 8740339 (-) True LOC120546393
XM_039781320.1 mRNA upstream 91314 8767999 ~ 8769024 (-) True LOC120546396
XM_039781321.1 mRNA upstream 104643 8781328 ~ 8787218 (-) True LOC120546397
XM_039781322.1 mRNA upstream 113147 8789832 ~ 8790701 (-) True LOC120546398
TU247804 other downstream 650772 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 909430 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 1642414 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 1644093 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1030 other downstream 1645770 7029974 ~ 7030046 (-) True trnak-uuu_19
TU247995 other upstream 107103 8783788 ~ 8787217 (-) False LOC120546397
TU248116 other upstream 452888 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 1422918 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 1825235 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 1844032 10520717 ~ 10521410 (-) True G183528

Expression Profile