RNA id: XM_039781318.1


Basic Information

Item Value
RNA id XM_039781318.1
length 1992
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC120546393
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 8723103 ~ 8740339 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTATTGTCTGTTATCACAACATGTGGAAACTTTCTTGTTATAATCTCTGTATTTTATTTCCAACAGCTCCACACTCCTACTAACTACCTtattctctctctggctgtggCTGACCTGCTTGTTGGGATCATAGTCTTTCCTTTCAGCATGGCATTCTCATATAGCTCATGTCTGTATCATGAGGGTTTATTTTACAGATATTATGCAGTGTGTCAGCCTTTGACCTATAGAACTAAAataaacccttgtgttgttgtGATCATGATTCTCGTTAGCTGGGGGGTTTCTGCTCTAATTGCAATAACCATCACAATTGCTGGATTAAACAATGATAAATGTGGGGAAAGGTGTTTCATTGATGTACTCATAGCAAACACTATTGGACCTATTTTATCATTTTACCTCCCAGTGATCATAATGCTCTGTATCTACCTAAAGATTTTCCTTGTTGCACAGAAACAGGAACGCAGCATCCAGAACACAACCTGTCAGAGCAAAAAGTCTGGAGCAACTGTCAGTAAGAATGAGAGAAAGGCCTCCAAAACTCTGGCTATCGTTTTAGGAGTCTTTCTTTTATGTTGGactcctttctttctttgtatcACTGTTATGCCTTTCAGTAATGACCCAGTGCCAGTTCCTGTGTTTGAAACACTTGCCTGGCTTGCACTGTCAAACTCCATGCTCAATCCCTTTATTTATGCTTTCTTTTACAGCTGGTTCAGATCAGCTTTTAGAATGATCATTTCTGGGAAAATATTTAATGAAATTAAGGACGACTGGCCCTTTCTCTTCTCCTTGAAGGGCCTGTTCTTGCATTTCAGTGAGCTGACCGGAATTCCTATCCAGGAGAAGCTGCCAGCCGCCATAGACAACAGGAGTCAGAACATCATGGAGTACTTCAAACAGCAGAAGACACCAGGGGTGGGGAAGGTTCTGGAAGCCTACAATGAAGAGAGTGGCAACAAAGCTGTCTGCACCATCATGTGCCTGCTTGCTTACTTCAAAGAGGGGGATGGTATCTTCCTAACGGCTGATCCCTCTGCCACAGCTGCCGATATCGAGAGAGCTGTTACCCTGCCAAGCACACCTCGATTACTTGTACCAGGAGAGATACTGCACGGCGCAGACACATGGATTATGTCCATGGAAGGAGCATGTGTGATGGGGCCCCACAGCAACCTCCTGCATGGATTGGCAGCAGTCTTCGCTGCCTACTATGTCTTCAACTTGCAATATCCGGGAGAAGCCGCAAGCACACTTGAGTTCATCCAGAGAGCCTTTTGCGGCATAAATCCCCCGACGGGCAGTAAGGCAGAGAAAAAACGAGGGCTGAACGCACCAGATTGCACACTTTTGAGGAAACTGGCGGCTGGCAGCAGTGAAGGGGGAACCCTCCGGCGGCCGATGGCAAAGGCAGAACCCTTCTGGACCCCAGTGGCAAAGGCAGAACCCTTTTggaggccggcggcgaaggcAGAACCCTTCTGGAGGCCGGTGGTGAAGGCAGAACTCTTCCAGCGGCTGGTGGCGAAGgcggccggcggcgaaggcAGAACCCTTCTGGCGGCCGGCGGTGAAGGCAGAAACCTTCTGGCGGTCGGCGGCGAAGGCGAAACCCCTCAGGCGGCCGAACTGGACGTCGAGGGCACTCAGGCAGCCGGTCAAGACGTCAAGAGCTCTTGGGCGGCCGTCGGTGAAGGCGAATCCCTTCTGATGGCCAAACAGGACGGCGAGGGCAGCGCCCCCCCCAGAGGCCAAGGCGGAGCCCCTTTGGAGGCTGTGCAGGTGAAGGGGCTAGCCAGCCAGGGATCTGGGAGGCTGCTAGGCAGCAGGGGGTCAGGGAGACTGCTAGGCAGCCGGGATTCAAGGGAGCTGCAAGCCAGCCGGGGATCTGGTAGGCTGCTAGCCAGCCGGGGGTCAGGGAGACTGCTAGCAAGCCGGGATTCAAGGGAGCTGCTAGCCAGCCGGGGATCTGggacgtattag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247940 lncRNA downstream 243757 8478912 ~ 8479346 (-) True G183042
TU247873 lncRNA downstream 291429 8431362 ~ 8431674 (-) True G183027
TU247857 lncRNA downstream 477338 8245565 ~ 8245765 (-) True G183013
TU247850 lncRNA downstream 531629 8191178 ~ 8191474 (-) True G183006
TU247822 lncRNA downstream 673118 8049578 ~ 8049985 (-) False opn5
TU247969 lncRNA upstream 30949 8771288 ~ 8771585 (-) True G183068
TU248059 lncRNA upstream 258236 8998575 ~ 8998828 (-) True G183136
TU248075 lncRNA upstream 280640 9020979 ~ 9024565 (-) False LOC120546609
XR_005636853.1 lncRNA upstream 358032 9098371 ~ 9099326 (-) True LOC120546288
TU248114 lncRNA upstream 386382 9126721 ~ 9129230 (-) True G183175
XM_039781317.1 mRNA downstream 6669 8715565 ~ 8716434 (-) True LOC120546390
XM_039781316.1 mRNA downstream 46418 8675816 ~ 8676685 (-) True LOC120546389
XM_039781315.1 mRNA downstream 61791 8660443 ~ 8661312 (-) True LOC120546388
XM_039781314.1 mRNA downstream 70976 8651258 ~ 8652127 (-) True LOC120546387
XM_039781313.1 mRNA downstream 99375 8619759 ~ 8623728 (-) True LOC120546386
XM_039781320.1 mRNA upstream 27660 8767999 ~ 8769024 (-) True LOC120546396
XM_039781321.1 mRNA upstream 40989 8781328 ~ 8787218 (-) True LOC120546397
XM_039781322.1 mRNA upstream 49493 8789832 ~ 8790701 (-) True LOC120546398
XM_039782894.1 mRNA upstream 177174 8917513 ~ 8931493 (-) True LOC120547332
XM_039781110.1 mRNA upstream 195585 8935924 ~ 8950403 (-) False mep1a.1
TU247804 other downstream 698059 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 956717 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 1689701 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 1691380 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1030 other downstream 1693057 7029974 ~ 7030046 (-) True trnak-uuu_19
TU247995 other upstream 43449 8783788 ~ 8787217 (-) False LOC120546397
TU248116 other upstream 389234 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 1359264 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 1761581 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 1780378 10520717 ~ 10521410 (-) True G183528

Expression Profile