RNA id: XM_039781337.1


Basic Information

Item Value
RNA id XM_039781337.1
length 7543
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC120546412
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16912722 ~ 16933375 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCGTTTCTTCAACAACAGATTTTACTCCTTGCATTTTATATTGAGACTTTTGAAAACTACACTGTCTtaacaaagaagaagaacatcTCGGCGATTGTGCAGACTACATTCGGGTTGCACTGTACCAGCACCGTCCCATCGCTGATTGGAGGATGTCCACCTAGCATGCAGACATGCAGTGTGCCAGACATGTTGGAGCAAGTTGTAGCTAAGCTAAATCATGTCTTACAAGGAAAGGAAGACATAGAAGACCCAGAGGAACAGTAGATCACTacagagagacaggagggaCGCCTGCAGTCTGAAGGACTACAAAAAAGATGGATGCAAACAAAGTATGGCAGTGGCGCATTATgcatgtaaaaacatttttgagacGTCCAGAATCATTCTATCACAGCAATAGAATAGGATTAAATTTTAATGTAGCATCCAAAACACAGAAATCAAAAGAATTACAATTATTGACAAATGGTGTCATGCTTGAGATCTGTGACTTTGCTGAAACAGTAAGCAAGAATCAAATGCGTTTTATCACAAACATCCTGGAGAACAATTTCGATCTTGGATTGGAAAATGAGCAACAGCGTGTTTATTTTACCAATCAAATTAAAATCAAAGTCAAAGACCGGAAGAGGTTATCTCTGCAAGATAAAAATGAAGTTTTTACTCTCTTTGACATATCATCTAAGCCAGAATGCAACAGTAACAATGGACTGAATATGGCATCTACAGAGCGTAAGACAGAAAGTTTCCTGGTGGAAATTGATGATACTGATGATAGTGACTATGAAGATACATTCAAGTGTTCACAAGCAACATCCAAAGAATACATGAAGACAGAAATTCTTTCAGAAGAGATAAATGGAGCACATGGTGATGACAGTGAACATGAGGATGAATTAAAGTATTCAGGAGCACCGTCAGCAGAAGAACTGAAAGAGGATGTTCTTCCCTCTTTGTTCCCTTCTTGTGAAGAAATTGGTCTGAACCTAGACATTGGGTCAAAACAAAGTCTAGATCTAGGTTTGTTGACCAATGGTGTGATGTTAGAACTACTGCAGGTCACTAAAATACTGGCTGCATGCTTCAGCCGTATTATTTGGGATGTGTTGGGGCACAACTTTAAACATGATCTCGAAAGTCAACAGGAGAAAAATCGAGTTTTGTCCAAGATATTGTACATTCTGAACAGAAGAAAGCAACTTATGATCTTCGGCAAAGTAAGCCCAGAGTTTGAAAATAAGCCGTTTTCATTACAGAAAAGACCCTTCAAAAGAAACAGAGGGTCAGCACTGTCCAATATGGAAGCCCTGCCGTATCAGTTTAAGGAAGTGACAAAAAGAAGGCAGTCTGATTTAAAAAGTAAACAGGAAAAAAGGGCTCTGTTGACAAGTGAAAGGGCGAATAAAAGGAGCAGAAGATGGCAGCCTAAAGGCACAAAGACAAACATACCTTATCGTCCTACTGATTTGTGCACCGGTCATACAGCAAAGGGAGATCATTGTTACAGTCATCCTCTAACAGAAACTGATCTAGACTACTACACTGGCAATGAACGTGACATGGAACAAGAGGAAATGGAAACCGAGAACAACTACACTTGTCCTCTAGGAGAGTCTGATCTAGACTCAGACGAAGTCCCAGATTCAGGAAACACTGGCAATCAGATTGACTTGCAAAGCACAAAAAGTTGTTCTCTGAGCTTGGACATTTCTAGAGAATCAAATTCAAGTTGTCCGGGTATTTGTGCACCTACCCTAACCACCATTGATATTTCATCCACTTCATCAACTGTAAACTCAAATGTGAACCCACCATTTGTAAGGCAACCTGATGAAAGAGGACTCTGTGGAGATGAAGAGCAAACACAGAATCCAAGAAAGTCACCAAACGAATGTGACATGGAACAAGAAAAAATGGGAAcggaaacagaaaaaaacatgtggAAGTTGCGTGCTAACCGTGTAAAACAAATCCTCTCTTCATCAGAGTTCGGTCCATTCGACAAGTCCAAGAGATTTGGCCTTGAATTCAATGTTGGATTTGGCCTGAAGCAAAACTTCAGTGTAGACTCTTTGCCAAATCCAGTTCTGCTCGAAGTTGCTAAATTTGCCTTAGCAATGAATTCATCCCAACAAAATTTCATCATGGAGATTATTGAGTACAACTTTGACATCAGCCTGCAGAGTGAATACCAAAGAAATAGTTTCACATGTGAAATCATGAAAAGAATAATACAACTGAAAAACTCTGAAGATGCAGTTAAATTCTCAAAAGATATCTTTGAACTACCTGATCCCATGTCATcaaaaaaaatggcaaatatTAGTGTGGGCAGTGTCAATTCTGAACTTGGATACAACATATCGAGAGTGGAGGAGTGTGACGTTGCTCCCGGGTGTCCTGCTCATTCACATGCTGAAACCAAAGATCATATTCCAACCAACAGTGTTGAGGTGTATCCCATCTGCAAGGAAATAGGTCTGAAgttacatgtaaacaaacatcaACCAAACAAAAAACTGGATATCAGCAAACTGACCAATGGAGCGGTGACTGAAGTGACAAACTTTGCAGAAACGTTGTGTGGGACATGTGAGCAAATCTGTCTTGACATCCTGAGACACAACTTGCATCTTGATTTGCAAAGTGGAGATTCTGATCTTGCCAGAAGTATTGTTGCCCGTATTCCTGCTATAGTGGAGCAAAGGAAACTAGTGGCCAGTGTTAAAAccttaaagaaaataaagggctCAAGAAAAGACTCCTCAAAGAAGGTGAAACTGGATTGCCAGAATTACCAAAATGTGGATGCATGTAGTGCTGCTTCTTCCCAGGCTGAATTCAAAGACCAAGATATAGGGAATTCCCCTGACACTGAACATCAAAATGAGCTCAATTTAAAGCTGTGGAAATTGCGAGCCAATCATATTCAGCAAATCCTCTCAATACCTCATGAAGAACATTGCCCACTTTATTCTTACTCCAGATGCAAGAAAGTaggcattgattttaatgtaggaTCTGGAGTAAAACAAAATCTTGATCCCAAATTACTGACCAATGGCATCATGGTTGAATTAAACACGTTTGCCACAGCACTGCTGTCAGCCCAGAAACATTTCATCACGGAGATACTAGAGTATAATTTCCATCTGGATTTCAAAAACAAGCTATATCGCAATGCCTTTGCACAGCAAACTTTAGAAAAAGTTAAAGTTGATGCACATAAAAGAATAAGCGTTCCTCGAATGAAAATGCAGTTTGAACTCCCCGACATGAGGTACCTACAAAACCCTACTTATGAGAAAAAGACACATTGCCCCAAATGCTTTCAAGACAGAAACCAAGAGCTTCGACAGGATGAATCTGACCCTGGTCTCATGCATCAACCTCGTCCACATACCATAACTGACGCAGTCACTGCAGATGCAACCTGCACCGCACAAAAGCCTTCAAAAGATCCGTTCTCTAACTTCTCAGCAATAGAGGAAACGATAATGGACAGTTACCCTCGCTGCAAGAAAATAGGTTTGAACCTGTGTGTGGACAAAGAACGACCAAAAGAAAAGCTTGACACACATGCATTGACAAGGGGGGCTATGATTGATGTGGCTAGTTTCGCCAAAAAATTGTGTGCAACAAAAAGTGGCATCATTCATGCAGTCCTTGAACACAACTTCAACTTAGGCATGCAGAGGCGGGACGTTCGTATTGCACAGCAGTTCCTCAGAGCGACGGCACTAAAGGATGGCGGGCTGGCCTGGTTTAATGAAGTTTTTGTTATTCAGTCATTTTCTCACAGACGACCTGGACATGTAAGTACCGGTAAACTGAAACGGGCAGCTGCCATGCAGAGAAGTGAATGGAAGgaagttatcaaaaaaagaaagctgGCACTGCAAACAAAGATGAAAAGAGCCACGCTGCCAAGTCATAATATCAATGACGTAAAATCAAATTCAAATCgtcaaaataaaggaaacagcTTTCCCATTTGCACTGAGATGGGTTTGGATCTAGATGTGACATCCAAACCAGGTGAAAGAAAAATACTGGACTTAAAGTTATTGACCAGAGGGGTGTGTGACATGGAACAAGAGGAAATGGAAACCGAGAACAACTACACTTGTCCTCTAGGAGAGTCTGATCTAGACTCAGACGAAGTCCCAGATTCAGGAAACACTGGCAATCAGATTGACTTGCAAAGCACAAAAAGTTGTTCTCTGAGCTCGGACATTTCCAGAGAATCAAATTCAAGTTGTCCGGGTATTTGTGCACCTACCCTCACCACCACTGACATCTCATCTACTTTATCAACTGTAAACTCAAATGTGAACCTACCATTTGTAAGTCCACCTGATGAAAGAGGGCTCTGTGGAGATGAAGAGCAAACACAGAATCCAAGAAAGTCACCAAACGAATGTGAcattaaacaagaaaaaagggGAACAGAGAACAACCACACTTGCCCTTTAGGAGAGTCTGATCTAGACTCAGATACTCGCAATGAATTTGACGTGGAACAAGAGAAAATGGAAACGGAGAAAAACATGTGGAAGTTGCGTGCTAACCGTGTAAAACAAATCCTCTCTTCATCAGAGTTCGGTCCATTCAACAAGTCCAAGAAAGTTGGCCTCGAATTCAATGTTGGATTTGGCCTGAAGCAAAACTTCAGTGTAGACTCGTTGCCAAATCCAGTTCTGCTCGAAGTTGCAAAATTTGCCTTAGCAATGAATTCATCCCAACAAAATTTCATCATGGAGATTCTTGAGTACAACTTTGACATCAGCCTGCAGAGTGAATACCAGAGAAATAGTTTCACATGTGAAATCATGAAAAGAATAAGACAACTGAAAAACTCTGAAGATGCAGTTAAATTCTCAAAAGATATCTTTAAATTCCCTGGTCGCATGCAATTAATAAATATGGAAAATCAGAGATTAAAGGAGTGTGACGTTGCTCCCGGGTGTCCTGCTCATTCACATGCTGAAACCAAAGATCATATTCCAACCAACAGTGTGGAGGTGTATCCCATCTGCAAGGAAATAGGTCTGAAgttacatgtaaacaaacatcaACCAAACAAAAAACTGGATATCAGCAAACTGACCAATGGAGCAATGACTGAAGTGACAAACTTTGCAGAAACGTTGTGTGGGACATTTGATCAGATTTGTCTTGACATCCTCAGACACAACTTGGATGTTGATTTGCAAAGTGGAGATTCTGATCTTGCCAGAAGTATTGTTGCCCAAATTCCTGCTGTAGTGGAGCAAAGGAATCTAGTGGCCAGTGTAAGAGCCTTAAATAAAACAAtgggcaaaagaaaaaaactctcAACAAAGGTGAAACTGGATTGCCAGAATTACCAAAATGTGGATGCATGTAGTGCTGCTTCTTCCCAGGCTGAATTCAAAGACCAAGATGTAGGGAATTCCCCTGACACTAAACCTCAAAATGAGCACAATTTAAAGCTGTGGAAATTGCGAGCCAATCATATTCAGCAAATCCTCTCAATACCTCATGAAGAACATTGCCCACTTTATTCTTACTCAAGATGCAAAAAAGTaggcattgattttaatgtaggaTCTGGAGTAAAACAAAATCTTGATCCCAAATTACTGACCAATGGCATCATGGTTGAATTAAACACGTTTGCCACAGCACTGCTGTCAGCCCAGAAACATTTCATCACGGAGATACTGGAGTATAATTTCCATCTTGATTTCAAAAACAAGCTATATCGCAGTGCTTTTGCACAGAAAACTTTAGAAAAAGTTAAAGTTGTTGCGCATAAAAAAACCCGTGTTACTCTAATGAAAATGCAGTTTGAACTCCCTAACATGAGGTACCTACAAAAACCTACGTATGAGAAAAATACATATTGCCCCAAATGCTTTCAAGACCGAAACCAAGATCTTCGTCAGGATGACTCTGACCCTGGTCTCATGCATCAACCTCGTCCACATACCATAACTGACGCAGTCACTGCAGATGCAAAGTGCACCGCACAAAAGCCTTCAAAAGATCCGTTCTCTAACTTCTCAGCAATAGAGGAAACGATAATGGACAGTTACCCTCGCTGCAAGAAAATAGGTTTGAACCTGTGTGTGGACAAAGAGCGAGCAAAAGAAAAGCTTGACACGCATGTATTGACAAGGGGGGCTATGATTGATGTGGCTAGTTTCGCCCAAAAATTGTGTGCAACAAAAAGTGGCATCATTCATGCAGTCCTTGAACACAACTTCAACTTAGGCATGCAGATGTCAGACGTTAATATTGCACAGCAGTTCCTCAGAGCGACTGCACTAAATGACGGCGGGCTGGCCTGGTTTAATGAAGTTTTAGTTATTCAACAGTCTTCTCACAGACAACCTGGACATGAAAGTAAACTGAAACAGGCTGCTACCATGCAAAGAAGTGAATGGAAGGAAgctatcaaaaaaagaaagctgGCACTGCAAACAAAGATAAAAAGAGCCACATTGCCAAGTCCTAATATAAGTATCATAAAAAGATCAAAGACAAATGCTCAGAGTCAAATACCGTTTAACTGTTATCCTATTTGCACGGAGATAGGTTTGGATCTAGACGTGACCTCaaaatcaggagagaaagaaaaactggACTTGAAGCTATTGACCAGGGCTGCAGTGTATGAGATACATAAATTTGCAATTAAGAAAACAGGACACTATTTGCCAAACGCTGTGTACGACATCCTTGACTATAACTTTGATCTTAGCTCACAACATCACAGGCGCTGGGAATTTTCCATAGCAACTTCATCCAAAATCCAAACCATGGTCAAGCAATATCGTAAAAATCGAAACCGACCAGACGAGGTCTTCAACTTACCATTTGTGTTTGCATCCGAGGCTTCACAAAGGTTTGTAGAGAAGAGACTATTTGAGAAACGGAACAAGTATTCCCGGGAAGAACCATACAAGAAAAAGGCTGAGGGAAGGTTTGTGCGCCAAGTGAGATACCATTCAGGTGTCAATCGCATCCATTTTCGTGGCGCTTTGTCCCACGATCTGTTGGATCCTGGGACATTAGAGCAGATGAATGGGAGTCTTGGAAGTGGAGGTCCTCTCCAGAGAATCCTACAGATTAAAGAGGAGAACGACGATCCACATTATGGCAATATGAAACAAGAACCGGACACTGAGGAAAAATACCGTCCACATTCTAAGGATGTCAAAACTGATCCCTGTACGATAGTGCAGATAAATGGCAATCTAGTGAGTGTTGGCTGTGGCAGTCCTCTCCAGAGAAACCTACAGATTAAAGAGGAGGAGAATCATCCACATCATGGCTATGTGAAACCAGAACCGGACACTGAGGAAAAATACCGTCCACATTCTGAGGATTTCAAAACCGAATCAAACACTGAGGATGTCGAGCATTTAGTCCCAGTCCACACCCGCCCCGGCTGCTCGATCGGTTCCTCCCTCTCCAGCAGCTTCATTTGCCAGCCTGGATGTCGGATCACCACCGCTATTCTACCGCAACAGaTGTCTGAGAGCTAG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250410 lncRNA downstream 88125 16824296 ~ 16824597 (-) True G184903
TU250404 lncRNA downstream 138451 16772721 ~ 16774271 (-) True G184897
TU250380 lncRNA downstream 150034 16709755 ~ 16762688 (-) True G184877
XR_005637030.1 lncRNA downstream 196405 16711035 ~ 16716317 (-) True LOC120547094
TU250369 lncRNA downstream 237215 16673588 ~ 16675507 (-) True G184869
XR_005637020.1 lncRNA upstream 318 16933693 ~ 16936181 (-) False LOC120547043
XR_005637021.1 lncRNA upstream 318 16933693 ~ 16935582 (-) False LOC120547043
TU250501 lncRNA upstream 318 16933693 ~ 16935625 (-) True LOC120547043
TU250524 lncRNA upstream 236314 17169689 ~ 17170262 (-) True G184989
TU250586 lncRNA upstream 332984 17266359 ~ 17269604 (-) True LOC120547341
XM_039782298.1 mRNA downstream 76739 16830041 ~ 16835983 (-) False gpatch2
XM_039782296.1 mRNA downstream 76740 16825652 ~ 16835982 (-) False gpatch2
XM_039782409.1 mRNA upstream 4402 16937777 ~ 16955937 (-) False LOC120547041
XM_039782407.1 mRNA upstream 4402 16937777 ~ 16955937 (-) False LOC120547041
XM_039782408.1 mRNA upstream 4402 16937777 ~ 16955937 (-) False LOC120547041
XM_039782406.1 mRNA upstream 4402 16937777 ~ 16955937 (-) True LOC120547041
XM_039781405.1 mRNA upstream 22873 16956248 ~ 16965367 (-) True ddx1
XR_005637006.1 other downstream 76739 16829796 ~ 16835983 (-) False gpatch2
XR_005636881.1 other downstream 394850 16490650 ~ 16517872 (-) False snap91b
TU250064 other downstream 1121164 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 2333553 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 2414352 14472201 ~ 14498370 (-) True G184299
XR_005637059.1 other upstream 828581 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 829023 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 829358 17762733 ~ 17762808 (-) True LOC120547353
TU250856 other upstream 831430 17764805 ~ 17766640 (-) False zgc:153284
TU250853 other upstream 831547 17764922 ~ 17766640 (-) False zgc:153284

Expression Profile