RNA id: XM_039781383.1


Basic Information

Item Value
RNA id XM_039781383.1
length 787
RNA type mRNA
GC content 0.56
exon number 5
gene id LOC120546456
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34584047 ~ 34595606 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAAAGCCATGACTAATGATGGATTCCACTTCAACCAGTTCGATGAAGTCTCATGTGGAGGTCAGCACTCTGGAAAGCCAGCTGGAGACTGGAGGAGGTCCTGCCGGAAACCATTCCGCCCTCAGCAAACCGTTCGAGCTCCTCGCAACGATCCTCAAGACACGTTCAAGGTCAAAACGAGCCAGGAGACAGCAGCACCACCATGGGAAGATGGACAGCTGCCGATAATCTCCTTTACAGGCAACTTGactaTTCCCTTCAGAAAGGAGCTGGAGGAAGGGCTGGCTGTTGGACGCAGCATCACTATTAAAGGAGTAACCAATCACACCGCTCAGAGCCTGTACGTGAACCTGAGAGTGCCCGACAGCAGCGACATCGCTCTTCATCTCAACGCTTGCCTGAAGAAGAAGGTCTTCGTCAGGAACTCCTTCATCTCTGGCTGCTGGGGCCCCGAGGAGACCAAGCTGGACTCCTTCCCCTTCACAGAGGGGGGGTACTTTGAGATGATCGTCCTGTGTGAGTCTCAGCAGTTCTGCGTGGCCGTTAACGGGCAGCACCAGCTGGACTACAAGCACCGGGTCCAGGACCTGAGGCGCATCACGCAGCTGGAGGTCCTGGGAGACGCCACGCTGCACGCCGTCATCCTCCTCTGAACTCGCCACGCTGCACGCCACGCTGCACGCCACGCTGCACGCTGTTAACATCCTCTGATGgcccagtggatatgacacatgcctcaTCAACCAATgagtccctgagcaaggcacttaacccctagttgctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256933 lncRNA upstream 1544 34577317 ~ 34582503 (+) True G189579
TU256879 lncRNA upstream 21153 34542667 ~ 34562894 (+) True G189548
TU256919 lncRNA upstream 21795 34483876 ~ 34562252 (+) True G189568
TU256928 lncRNA upstream 26893 34556798 ~ 34557154 (+) True G189576
TU256927 lncRNA upstream 37880 34544485 ~ 34546167 (+) True G189575
TU256892 lncRNA downstream 54 34595660 ~ 34607338 (+) False G189555
TU256897 lncRNA downstream 54 34595660 ~ 34607338 (+) False G189555
TU256900 lncRNA downstream 54 34595660 ~ 34607338 (+) False G189555
XR_005636921.1 lncRNA downstream 579 34596185 ~ 34607342 (+) True LOC120546694
TU256931 lncRNA downstream 14615 34610221 ~ 34645310 (+) False G189577
XM_039781801.1 mRNA upstream 12199 34559932 ~ 34571848 (+) True LOC120546680
XM_039781382.1 mRNA upstream 43960 34531388 ~ 34540087 (+) True LOC120546454
XM_039781778.1 mRNA upstream 56401 34514822 ~ 34527646 (+) True LOC120546659
XM_039781380.1 mRNA upstream 130252 34378500 ~ 34453795 (+) True LOC120546451
XM_039781721.1 mRNA upstream 210545 34360126 ~ 34373502 (+) False LOC120546638
XM_039781793.1 mRNA downstream 26450 34622056 ~ 34624173 (+) True LOC120546672
XM_039781765.1 mRNA downstream 31872 34627478 ~ 34630935 (+) True LOC120546652
XM_039781767.1 mRNA downstream 184732 34780338 ~ 34795615 (+) False LOC120546653
XM_039781766.1 mRNA downstream 184735 34780341 ~ 34796403 (+) True LOC120546653
XM_039781384.1 mRNA downstream 207997 34803603 ~ 34827491 (+) True LOC120546458
XR_005637065.1 other upstream 13953 34569956 ~ 34570094 (+) True LOC120547363
XR_005637064.1 other upstream 18440 34565469 ~ 34565607 (+) True LOC120547362
TU256876 other upstream 31682 34549369 ~ 34552365 (+) True G189545
TU256925 other upstream 45422 34531517 ~ 34538625 (+) False LOC120546454
XR_005637063.1 other upstream 59021 34524888 ~ 34525026 (+) True LOC120547361
TU256938 other downstream 67409 34663015 ~ 34699244 (+) True G189582
TU257129 other downstream 228436 34824042 ~ 34825170 (+) False LOC120546458
TU257179 other downstream 413894 35009500 ~ 35010825 (+) True G189738
TU257158 other downstream 418789 35014395 ~ 35017163 (+) True G189721
TU257203 other downstream 549904 35145510 ~ 35147428 (+) True LOC120546683

Expression Profile