RNA id: XM_039781420.1



Basic Information


Item Value
RNA id XM_039781420.1
length 2975
RNA type mRNA
GC content 0.57
exon number 7
gene id tab2
representative False

Chromosome Information


Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 959505 ~ 1010013 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ACTTGCTTATGCAGCCGCCATATTCTGTGACAGTATTTTGATTCGTATCTGCTGGAAgtgaggaaaaagagaaaagtgaaGGGCTGtcgaggggagggggggggctgaAGAAGAGGAGCTGTCAAAAAGTTATTCCCGAGTCTCTGTCAAACGGCGGAGAGCTAAAGCTCCCTCCCCTAACGCTATTTCGAGGACACACAAGGCCCGGGGCCTCGGTGCAGTTAGCTCTTCGTCTCCCTGGTAGTAGCTGGACTCCTCTCGGCTTCTCCTGTCCCAGCTCCGCGGCCCTCTGGAGGTCCGGCGGCGGTCTCGGGTGTTGAAGGCGGCCCGGGGAGCGGCGGCGGCAGCAGAGACGGAAAGAAGATGTTCAAGATGAAGGCGGTTTGCTCCCACTACTGACGCCCCAGTGCGCTGAACAGAGCAAGCAGTCCTGACCTGGCAACATACGAATGGCACAGGGAAGCCACCAGATTGACATTCAGGTTTTGCATGACCTGCGCCAGAAGTTCCCTGAAGTCCCAGAGGGTGTTGTCTCCCAGTGTGTTCTGCAGAATAATAACAATTTAGACGCCTGCTGTGAATACTTGTCCCAGGTCAGTCCAGGCTACCTGTACAGCGAAGAAGGAAACCTCGGCTTCTCTGACGACCCTAGCCTCATCAGGCTTCGTAATCACATGACCCAGCTGAACCTGGGCCTGCAGTCTCAGAATGTGCATGTGGCCCCGGGCCGGGACGGCCTGAGAATGAACGGCAGTCGCACTCTGGCCCACAGCCTGAGTGACGGGCCCCTCCAGACAGGCCAGGCCCCCAACAGTGACTTCTTTCAGCAGGAGCCCCAGTCAGCCCCAGTGCAGTTGCCCTCCAGCATCAATGTGTCTGGTGTGATGGAGCCCACAAGCAAACCGAAGCCTCCACAGCACCTTGGACTCTACCCTCTGGGTGTCAAAGGAGCATCTATGGGTGTCCAGCAGACGCCACGCTTCAACCCCATTACCGTGACGCTAGCCCCCCAGAAAGGCCGCAACACTCCCACTTCTTTGCACATACACGGCGGTCCACAGTCGGGCCTCAGCAGTCCACAGGGTAACTCTATTTACATCAGGCCCTATGTTAGCCAGTCTGGTACGACCCGGCAGAACCAGCAAGGGGGAGGCAGGGCCCAGTACAGCCCCACCTCCCAGCCCCAGCAGCAGATATACCAGATTTCACACCCCTCCTCCATGTCCGGCTCCTGGTCCGGCCCTCAGCACGCCTCCTCCTCACATACCTCACAGCACCAGACCCAGGGCCACCAGACTTCTCACGTCTACATGCCAATCAGCTCCCCCACAAATCCCCAGGCGCCCTCCATTCTTCCCACTGGAAGCCAGGCCTCGTCCTCCGGTGTCTCCTCatgctcttcttcctcttcctcctcctccgtcaTGCCCACCTCCCTGTCTACCATCAGCCAGTACAACATCCAGAACATCTCCACTGGCCCACGGAAAAATCAGATAGAGATCAAACTTGAATCTCCTCAGAGGAGCAACTCCACAACCACAACTGCCGTGTTGCGGACGAGCAGTGGGACCCggtcctcctccacctcctcctcctgccctgcctcttcctcctcttcaacTGGGGTGGCTACTGTCCCCACCACCCCTCTCTCCATCGGAGGCCCAGGTCTGAGCCGCAGCCAGCCCACTGTTTACATCTCTGCCAGCCCGCCTACTGCTGCTACCGCTCCCTCTGAGGAGGCCATCGTGGCCTCAGCCGGCTCCCGCTCCCAACCTAAGTTTTACATTTCGGCCAATGCCTCCAGCGATGACAGTGGGGGAAGGAACCCTCCCACAGTCTACATCTCAGCCAACCCTCCTTTACAGGGGTCCTCAGGGGCCAGGAACATAGGGGGCCAAGTGAGCATGGGCCCCGCCTACATCCACCACCATCCACCTAAGTCCCGTGCCTCTTTAGGAGGGGGAGGCACAGCTTCTTCCCCACGTGTGGTGGTGACTCAGCCCAACACCAAATACACTTTTAAAATCACAGTGTCCCCCAATAAGCCCCCAGCTGTGTCCCCCGGAGTCGTGTCCCCTACTTTTGATCCCAAAAACCTCCTCAGCCTACCCTCAGACCACCACTATGTGGAGCCAGACCCCCACCATCTCTCAGACCCGCTGTCACCACATAAGGAGAGACCGAGTGAGCCTCGCAGACTCAGCATGGGCTCTGATGATGCAGCGTACACACAAGCGTTGTTGGTCCATCAGAAGGCCCGCATGGAGAGGCTATGGCACGAGCTggagctgaagaagaagaaactggAGGAGCTAAAAGAGGAGGTCAACGAGATGGAAAACGACCTGACCCGGAGACGGCTGGAGAGATCCAACTCAGCCTCCCAAATTCCTTCTATTGAGGAAATGAAGCAGCTGCGATGCAAAAACCGGTTACTGCAGATCGACATTGACTGCCTCACCAAAGAAATTGATCTCCTTCAAACAAGAGGACCACACTTTAATCCCAGTGCAATCCATAATTTCTATGACAACATTGGATTCCTCGGTCCTGTCCCACCCAAACCCAAAGACCCGGGCAGTAAGATTGTGAAGCCCATCGCAGACCAGGAGGAGGACGAGGGGACGCAGTGGAGCTGCACCGCCTGCACCTTCCTCAACCATCCCGCCCTCAACCGCTGTGAACAGTGCGAGTTCCCGCGGCACTTCTGAGCCAACGAGGCTGCCGCACGCCGCCGCCTGTCTTCTACCAGACCAGACTGGCAAAGGGCCtttctgtttcttctttttcGGCCGTTGTATGGAAACTCggacgggggggggggcgtcATCGCGCATCATGCgtcctgttttttcttttttcctttctcctctctaAGGTTTGTAGGACACTGTCCACGGGAAGGCTTGACTGGCTAGTGTTTACAGCTTGTGTTTTTCATAACGGCTCGGCAGGGGTTGAATATATCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU245898 lncRNA downstream 86056 870657 ~ 873449 (-) True G181388
XR_005636859.1 lncRNA downstream 230064 727209 ~ 729441 (-) True LOC120546304
TU245803 lncRNA downstream 236625 722666 ~ 722880 (-) True G181330
TU245799 lncRNA downstream 269022 690225 ~ 690483 (-) True G181326
TU245772 lncRNA downstream 306706 652496 ~ 652799 (-) True G181299
TU245948 lncRNA upstream 124440 1134453 ~ 1145238 (-) True G181430
TU245947 lncRNA upstream 125861 1135874 ~ 1139220 (-) True G181429
XR_005636832.1 lncRNA upstream 140743 1150756 ~ 1156145 (-) True LOC120546201
TU245966 lncRNA upstream 158066 1168079 ~ 1172889 (-) True G181444
XR_005637011.1 lncRNA upstream 174535 1184548 ~ 1187639 (-) True LOC120546998
XM_039781871.1 mRNA downstream 50333 897931 ~ 909172 (-) False ginm1
XM_039781870.1 mRNA downstream 50334 897931 ~ 909171 (-) True ginm1
XM_039781152.1 mRNA downstream 168563 788771 ~ 790942 (-) False LOC120546297
XM_039781151.1 mRNA downstream 168563 788772 ~ 790942 (-) True LOC120546297
XM_039782630.1 mRNA downstream 197600 667864 ~ 761905 (-) True LOC120547161
XM_039781594.1 mRNA upstream 28745 1038758 ~ 1126329 (-) False cdk19
XM_039781591.1 mRNA upstream 28745 1038758 ~ 1126320 (-) False cdk19
XM_039781589.1 mRNA upstream 28745 1038758 ~ 1126320 (-) True cdk19
XM_039781593.1 mRNA upstream 28745 1038758 ~ 1120951 (-) False cdk19
XM_039781590.1 mRNA upstream 28745 1038758 ~ 1119300 (-) False cdk19
unassigned_transcript_1007 other downstream 105282 854151 ~ 854223 (-) True trnav-aac_19
unassigned_transcript_1005 other downstream 111672 847762 ~ 847833 (-) True trnad-guc_21
unassigned_transcript_1002 other downstream 117480 841954 ~ 842025 (-) True trnad-guc_20
unassigned_transcript_1000 other downstream 122260 837174 ~ 837245 (-) True trnad-guc_19
unassigned_transcript_996 other downstream 130971 828463 ~ 828534 (-) True trnad-guc_18
TU246464 other upstream 2365752 3375765 ~ 3376108 (-) True G181860
TU246538 other upstream 2598834 3608847 ~ 3610329 (-) True G181919
TU246718 other upstream 2881629 3891642 ~ 3893159 (-) False srp9
TU246726 other upstream 2896604 3906617 ~ 3912279 (-) True G182061
TU246722 other upstream 2898534 3908547 ~ 3914015 (-) True G182059

Expression Profile