RNA id: XM_039781432.1


Basic Information

Item Value
RNA id XM_039781432.1
length 6640
RNA type mRNA
GC content 0.44
exon number 32
gene id knl1
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25970398 ~ 25992873 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGCTAGCTAACTGAAGCAGCGGAATCGAGAAAGTAGAATAGTGGAATGCGCATGCGTGGAGGCGGCTAAATTCAAAACTAAAGACGTTAGCATTACATCTGACCGAGGCTCGTTGACGTTAGCTGGAGCTTGCAGGTTCGCACATCGACCGAGCTAAACATAATCGACATGAAAAGTATTTTAAGTTAACGTAAATTAAGAAAAACACAACCGTATCCGTGGTAAAACACGAGTAGCTAATTAAGCTCATTACAAATAGCTACAACTACAAGTTGAAAATGGAGCCTCTGGATCCTGCCAAGAATGATGAAGGCAGTGGATTCACCAAGCGCCGCATTTCTTCGattttGAAAGCTCCACAGAGATCATCAATGAAATTCTCTGAACCAGTGCAACAGGAAAATGTGGTGGAATGTGCCAAACCAGTGGAAAAGAGGAATTCAAGAAGAGTCAGTTTTGCCCCTGCCAACAATGTTCTCCTGTTCTCAAAGGATGGAAAAAATGCCTCGCCTGCCAAAAGTCCTTTACAAGAGTTAATAACAACAGCGGCAGCCACAATAAATAGGGTCCAGGTGGCAGTCACTGAAGATGGGATTCAACAAATTACAGGAATGGAAACTCTATTGAATGCTCCTCTACATGCTTCTCAACAAGGGCAAAAGGTCAACTTTGATACTGTGGGTGACTTAGGGGAGAAAACCGTGATGTTTTCTGCAAATGATGAATTCATGGACATGACCCACAGTCACACAATAAACATTGCCGGTGATGCAGAATTACTTGCAGATATTTCCCTCCAGAACTATGACCCTTTACCCTCTAGAAGAGAGAAAACTGAGATGTTCACTGTGAATAATGCATCCATGGCGAGAAACATATCCTCATCGGTTCCTTCTTTGGATCCTGAATTTGAAAAATTCCTCGCAAGTCACTCTAAACAAAGTGGCCCCAGCTCTAGTCCGGTCATCACCAGAACAAAGCCTGCTTCTGGCACATCCTCTGAAGAAGCAAACCGCTCTCTGGCCCAGATTAAAACACAAAGGGCTGATGTGGATAAAGAAAATCAGGCTCCAACTTCAGTTTCAGCTGTGATGGAGAAGTCTTTCAATACATCCAGGAAGATTGGTGAATTATCTTATGGAAGTGCACTCTGTCCAGAAGATGATTTAAGCATGGATATGACTAAAGATCAGACGGACTGCATGCTGGGATTCGCTGATGATGATCCCTTTCAGTGTCTTTTTCCCACACAAGAAATGTATTCCTGCTTTGACAACAAAGTGTCACAGACAGCACAGAAGCCCAAACAACCACAGAAAAGCAGTAAAACACTGGCATCATTCAACCCTAAAGATATGGCATCCTTGAAGAATCCGGCTGTACATGCTTCTCATCAAAGACGCAAGGCCAACCTTGATACAGAAGAGGATTGCAAAGAGAAAACGATAATGTTCTCTGCAGGTGATGAGTTTATGAATATGACTCAGAGTCACACTGTAAACATTGCCAGTAGTTTATTACCACCTCCGAACCAAAACTTGGACATTGTTCACACTCGTGGAAAAATGGACAATGCTTCATCTCTGGAGAGAAAGCGTGAGACGTGTGGTGCGCCTGGCTCGTCAGCTAATGCTTTGGATCTAGGATTTGAAGACTTCCTTTCAAGTCTCTCTAAACCAGGCGCCTCCAGTGGTAATCCTGCGATTGCCAGAACGGAGCCAGCCTCTAAGGAAACCGTTGACACAAACTGCTCCCTGTCCCAGCTTCAAAGTAATATTGGGAAAGGACGTCAGTCCCTCATTACATCCAGGAGCTTTGAAAAATCATTTAATGGAGGTACAATCTGTCCTGAAAATGATGTGAGCATGGATATGACTGAAGCTCAGACGGGCCGCATAATAGGGTTCACCGCCTCAGATGATCCTTTCCAGTTTCTTTTTCCCACACAAGACATGTACCCCCACTGTGAAGGTCTGAAGAAACAAGAGATGACTTCAGGACTGAAGAACAGCGAAGCACTAGGGTCATCTAACCGTGCGGGTATGGAAACTGCATTGAAGCCATCTTTGACAAAGGTGCAAAGAAATCCGGTCAAATTTGATCTGGAAGATGACTGCAGAGAGAAACCTGGGAGGTTTTCTGCATATGATGCATGTATGGATGTGACACAAAGTCACACTGTCAACATTGCCACTGGTTTCGAGCTGCAATCGTTTCAAAATGTAGACGTTTTGCCTATGTGTGGAGAGAAAACATTTAGGCTCGCTGCAAATGATACCTCTATGGATATGACCAAGTGCCTCACTGTAAATATTGCGGAATCAGTTCTTCCTGTGAAGAAACAAGATGATGAGACATGTGGTCTGCCTAGAAACAGATCTTCATCAGCACGCAGTGTGGATCCAAGCTTTAATAAGAGCCTCTCAAAACCAAGTGGGCCCAGTGTTAATCCTGTGGTCGAAAGGATGACACCTACAGCTGCACAACACAGCATGGGAGACTCATCGAATGGAGTGACAATCTGTCCAGAAGATGATGCAAATGTGACTGAAGCTCAAACAGGCCGCATTTTAGGACTCACAGATACAGATGATACTCCTCAGTGTCTTTTCCCCACACAAGACATTTACCCCCAAAGTGGTAGTTTGAAGAAAGCAGAGATGACTTCACGACAGCAGCACAATGAAACAGTGGGAACGTTCCGTAAAGGTATGGATACCTCATTGGTGCAAAGAGATCAGGTCAAGTTCGATGCTGAAGACTTCCGTATAGAGAAAACGGTGAAGTTTACTGCTGACGATGCCTGTATGGATATGACAAGAAGTCACACTGTAAACATTGCGACTGATTTAAAAGTGCAGCCACACCAAAATCTGGACTTTTCCCCCGCTTTTGGAGAGAAGACCATGAGATTCAACACAACTGATGCAGCTATGGATGTGACAAGAAGTCTCACTGTAAACATTGCCACTGATTTAAAACTGCAGCCACACCAAAATCTGGACTTTTCCCCTGCTTTTGGAGAGAAGACCATGAGATTCAACACAACTGATGCAGCTATGGATGTGACAAGAAGTCACACTGTAAACATTGCCACTGATTTAAAACTGCAGCCACACCAATATGTGGACTCCTTACCTGCTGGTGGAGAGAAAACAATGAGATTCAACACAACTGATGCAGATATGGATGTGACAAGAAGTCACACTGTAAACATTGCCACTGATTTAAAAGTGCAGCCACACCAAAATCTGGACTTTTCCCCTGCTTTTGGAGAGAAGACCATGAGATTCAACACAACTGATGCAGCTATGGATGTGACAAGAAGTCACACTGTAAACATTGCCACTAATTTAAAACTGCATCCATACCAATATGTGGACTCCTTAGCTGCTGGTGGAGAGAAGACCATGAGATTTAACACAACTGATGCAGCTATGGATGTGACAAGAAGTCACACTGTAAACATTGCCACTGATTTCGAACCACCGTCACACCAAGATGTGGACATTTTACCTGCTGGTGGAGAGAAGACAATGAGGTTCACTGACAATGATGCAGCTATGGATGTGACCCAATGTCTCACTGTAAATATTGCCAGCAATTCAGTATCAGATTCACTTCTTCCACACCGAGATTCTAATATTTTATTCACCCATGAAGATGTGGATTTTCCTTTATCTGCAAAGAAGACCCATCGTCCGCGCGGAAACCAATCTTCATCTGCACACATTTTGGATCCAGGGTTTAAAAACTCCCTGTCTAGGATGAGTGACCCCTGGGCCAGAGCAGTGGCTCCTTCTGCACCATCCCCTCAAGAAACTCCAGACACAGATGGCTTACTGGACCAACTTAAAACACAGAAGCCTGATGTGGATACTGAAAAGGTAGCTTTACCTTTTGTTTCTGCTGTCTTGGAGAGACCAGTGAATAAAACCATGACCGACGGTCCAGAGCACGATGTAAGAATGAATATGACTGAAGCTCAAACAGGCGCCATTTTGGGACAAACGTATACAGGTGAGCCACCTCAATGCCTTTCTTCCACACAGGACTTGTACCCCAATCCTGACCATTTGAAGAAAACCGAGGCAGCTCCACAACAGAGAAATGAAGCACTGGGATCCTCCAACCCTGGCGGAGTGGAAATCCCAAACCTTCTCAATTCTCCTGACTCAGATGAAACTGGCACCAGTAAGGAACCCAAatcaaaaaatctgacttgTACTTTATCACAGAAGATGGGGAATTCACCTTGTGCTGTTGACCATGATGTTGATACAGCGCCTTCACGGAAGTCCAAACGGATGAGCTTAGCCGATCTTAAGTCAAAAGTAAGGCGTTTGAGTCACATGGTGAGTACAGCCCCTGATATTATTGCCATGGACAGCCGCACAGCACCCTTGCCTCACCTGGAACGGGACATGGACAAAACCTCAAACGACAAAACCAAATCCCTGCCTGTAACAGAGCCTCAACTTGAGATGGGTTTGGTAAACACAGAAGAAAATACACAAGCTCCATGTCTTCTGCAAGGAGAGCAACCCTCTGCTACTACAACTCCTTTCAACTTGAAAACTAAACAACTTATGTCCAGACTCTCAATTGGAACCTTTAAGGCAAAACTCCCCCAAAAAAGCAAACCGGATGATCCAAAGAATGGGAATTCTGTGGACAAACCTCAAAGGACAGTCACTGTCAATGTTACTAATCAACTGAGCAACTTTGTCGATGATATGAGTGATATTTACAATGAAGAGCTTGGTAGCTATGAAGATATGTCTGAAACCTTGGACATAATGAGTCCTCAGAAAGCCACTGAAAAAGTGATTGCTTCCCAAGAGTTAGACATGGATGAGTGTTTAGAGCAAGATATATCTGAAAAGGACTTTATTAGTCCTGTCAGTGGAAAAAAGAGACCTGTGCCAGCAGATGAAAATAATGTGGCGGATGAGAAGAGACTGAAAGTATCCACCGTGGCGACCACTGATGTTGAAATGGGATTTCAGTCTCATGTTGTGGAGTGTGACAGCAACGCTACTACAGTTCCAAGCATGACTACACAGACCACAGATTACTCTAACAGCAGTCACACAGCCAGCATCAGATGTGAAGCTACATTTGAATCAActtaCAAACAAAGCCTGTTTGAATCCCAGCTGGAAGACTACGCCAATGATGTTCAGAGGAAACTCGATGATGGCACCATTACATTGTTAGAGTTCTTTCAACTCTTCAACATAGACTTTGTCATCCATAATCCTCGGCAAAGCATCCTTCCTGGCAGAcTTTTGTCAGACACAGATCGCACACCGATGGATTTATTGAAAGACAGGCACATCAACCGTCCTAAACAGACGGTGTATGAGACCGATGTCCTCAACCTTACAGAGATGGTGGAGGGGTTGAAGGAGCGAATGCGGGACCTAGACAAACAACTGAAGATTGTTAATAGACCTTTGTGGGAAGAAGTGAGAAATTATTCAGAGAAAGAGCTCAAATCTTTTGGTGCCAAACTAAAAGAGAGACATAACCTGTTCAGAAAGTTGAGCAAAGTTCAGTCGCATGAAATGAAGGAGGTGTTGTACTCCAATCTTGTGCAGGCTAATCTGAAGGAGCAACAGAGGCCGAGAGGAATGATTGAGGAAGCAGATGGGATGATAAAAAGCTTGGACGACTGTATTCGTGAATTAGAAACAGAACTTATTGCCGTTGAAGAGAGAGGCTTCGAAGACCAACCAAGTCTGAAATCACGTCGCAAAGaaATGCAAAAAGTCACAGAGGCTTTGGAGGATAATAACCGACAAATATGTGAACTGGAGATGCAGAAGAAGCAGACTTCAAATAAACTGAGCAGGCTGAAAGTGGAGACGAGCAACCTTGAGAGCCACGTCACCGCACTGCACATGGTAAATGAATGGAAGTTTGGGGAGAAGAACGACAACTGCAGTGTCTACACTTTCCTCTATGAGACCTTGATTCTACAGTTGGTGTATGAAAAATCCGATGgaaATGATGCTGGTAATCAGTCTGAGAGGAAAATATCGCACATCACATTGAGGCTTCAACTTGAcgATGAAAAGTCGCAGGGTAATGCCCGCcttgttcacaaactgctctctCGGTACATCGAGGGAGTCCCTGACTGGGTGGAGAAATATCCAACGAGCAGACATGTTCCCCAGCTGCTCCATGACGTCAGCCTGGTGGTGAGTCGCTGTCGTCTGCTGGGAGAGGAGTTGCGTCGGCTGAAAACGTGGGGAAGCGTGAGGCTCAACATTCTCAACATGAGCTGTGTGGACACTCGagTGCACTTTGTCTTCAGCAGTCTCAAGACATTTTCCCAGTTTGAGGTGATCTTCTCGGTCAGTTTGATCGGCCAGCCCTACGCCCTTCAGTTGCAGAGCTTTAAAAACATGATCGGAAACACAACGGTCCAACAGATTGAGGAGATTGTGTCGTCGTTCAGTCCATCCAAGAACCTCCTGACGAAGATCGTCAAAAAGATGAATGAAAATCTGCTCTATTAAGACCAACATTTTTATTCCAATCGGttgtaataaaaacaattttgtACATTATGAATGGAAAAAGTTTAACACATAACTggctttaaagaaaataaatgaataatctGTA

Function

GO: NA

KEGG:

id description
K11542 CASC5, KNL1; protein CASC5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253938 lncRNA upstream 1644 25968206 ~ 25968925 (+) False LOC120546493
TU253941 lncRNA upstream 3269 25967006 ~ 25967300 (+) True G187431
TU253934 lncRNA upstream 35310 25929576 ~ 25935259 (+) False abracl
TU253932 lncRNA upstream 36622 25930048 ~ 25933947 (+) False abracl
TU253870 lncRNA upstream 65167 25902938 ~ 25905402 (+) True G187378
TU253943 lncRNA downstream 14048 26006921 ~ 26027922 (+) False nudt14
XR_005637043.1 lncRNA downstream 254905 26247778 ~ 26249685 (+) True LOC120547280
TU254021 lncRNA downstream 264622 26257495 ~ 26260894 (+) False atp5mj
TU254024 lncRNA downstream 279495 26272368 ~ 26272595 (+) True G187508
TU254063 lncRNA downstream 322249 26315122 ~ 26315654 (+) True G187535
XM_039781434.1 mRNA upstream 1644 25955250 ~ 25968925 (+) True LOC120546493
XM_039781435.1 mRNA upstream 21159 25937301 ~ 25949410 (+) True heca
XM_039782466.1 mRNA upstream 35298 25930002 ~ 25935271 (+) True abracl
XM_039781267.1 mRNA upstream 68987 25888269 ~ 25901582 (+) True clu
XM_039782326.1 mRNA downstream 13981 26006854 ~ 26036232 (+) True nudt14
XM_039782075.1 mRNA downstream 54599 26047472 ~ 26102398 (+) False jag2b
XM_039782074.1 mRNA downstream 54601 26047474 ~ 26102398 (+) True jag2b
XM_039782810.1 mRNA downstream 146536 26139409 ~ 26159436 (+) True esr2a
XM_039780906.1 mRNA downstream 264602 26257475 ~ 26260895 (+) True atp5mj
unassigned_transcript_1083 other upstream 750629 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 961162 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 1462756 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1887465 24079603 ~ 24083104 (+) True G186975
XR_005636955.1 other upstream 2382055 23578378 ~ 23588514 (+) False nfkbie
TU253978 other downstream 35187 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 283822 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 452777 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 452777 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 664468 26657341 ~ 26657503 (+) True LOC120547357

Expression Profile