RNA id: XM_039781461.1


Basic Information

Item Value
RNA id XM_039781461.1
length 4158
RNA type mRNA
GC content 0.59
exon number 25
gene id bub1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 33201405 ~ 33228839 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAACAGCAGCGCGtcagagagaagaaaaacaaacctaGCTAGTAACGATGCAAGTTATCGAGAGTAATTGATTTGTGAATCAAACAATCTGATAGATTGGTCGGAAGCGACCACCAATTGAGATTTTAAAGTACGTTTTTAAACTGAATACAAAATGGATATTCCCACATACTTACAGCGCTTCAAAGACAGTCTGAGCACGTATACGGGAGACGACCCATTGGAGCGATGGGACAGCTTTGTGGAGTATCTGGGACAAAGATTACCTGCAGGCGGCTGCGGTGAGATGTCGCTGGTGTTTGACAGCGTCGTGGAGACATTTCTGAACGTCGAGCGCTACGCAAATGACATCAGATATGTGAACTACTGCATCAAATGTGCGAGTTATTATTCGGACCCCAGCGAGCTGTACCGTTACGTCTACAGTAAGGGCGTCGGCACCAGGACCGCTGCCCTCTACGTGGCCTGGGCCCAGCAGTTTGAACAGAGGGGAATGATCGAGCAGGCCGACGCCATGTACCAGAAAGCCATGGAGAACCAGGCACAGCCAGCCGACACGGTCCTTAACGAATACAGGCAGTTTCAAAGAAGAACAGGAAGCCAGGCTCCAGTATCAGGGAGTCGAAACCCTTTGCAAAACTCCAACTTAACCAATCAGATGTCCTCCCTTGCAGAGCCTGGAGCTCCAAACAAGGCCTCTGTGGATTGTCTACCCAAACCACCTGCACAGATAATAATAGTGTCTCGCTCTGAGACGTCGGGGACGATCCCCTCCGGCCAAGGCGCCAGCGTTCGGACGGCGTCGGCGTACACGCAGGAAGCGCTGGTTTGCGAAGGATCGGAATTAAGCTTTGAGGAGGTGCGAGCAGAAAACTACCTGCGTAAGATCCGGGagaagaaggaaaaggagctgAGAGAAATGGGcgcctcctcctctctccctcctgtctTCCGGGCAGAAGTTCCTGCTCTCACACACCCACAAGAGCTCCAACCCCCGCGTTCCACTTCATCATATGTAGCGGAGATgatgagggaggaggaagagaggatcCTGAAGAACACGTGTCGTCTGGAGGACGTGAACCAGGTCCTGGAGCCGCAGCTGTCCGTAGCCGAGAAGGCCACCAGTCTGAACCCCGATCCTACCCAGCAGCCCTTTGGCCGTGCTCGACCCTCAAACCGTCTGAGCAACAGGCGCTCTCTCGGCTTGAGATTACACCACGAGCCGCCCTTCATCCACGAGGCCGCCGCAGCTGACCCGCCTCCGCAGCAGCACAGCACCGCGGCTGCTGACGGGAGCGTTGGCTTACCGCCTCCAGCGTCTGTCGCCCCGGCGTGGACAGTTCCGCCCCGGTCCACTCAGCTGACTGTCGCCTCCGAGCAGACGGACGTGTCGCTCCACGGACCCGACGCGCTGTGCCTTCCTCCATCGGTCCTGGCTGACAGGAGCGTTCACTTACCGCCTCCAGCGTCCGCGGAGTCGATATCGGACACCGGAAACGCTGACTCCGGAAACGCTGGCGCTCTCTGCCAGGACAATCGTGTTCAGCCCAGCAGCTCGCGGAGCTGTCGCCCCCAGGAGCACCACGCCACGCAGCGTGATGTCAGTCTCCCGCCGCAGCTCGAGGACAAATTCAATCtgTCCCAGGGAAGCACCGCTAACCTGTCTCACATCACTCCCAATACTTCACTGGGCTTTGTTCAGGCCACACCGTCCAGGGTGCTGCCGTCACCCACTGTCAACACCCGGGAAGCACTGGATGTGATAATGGACATGTTCCAGGCTCCGACGTTCCAAGAGGACCCGTTCAGCAACACGTTGGTGTTCGGCGCTGCCGAGAATGAGTTTGATCCCGGCTTCGCAACAACCGacGGCGTCTTCTCCGTCACGAAGCCTGCGGCCGCAGCGCCGTTCACGGTCTACGAAGAGAAGGACGAAGAGAACGGCAGCGCTGCCGCTCCCGCTCCTGCTGCAGTCGAGAAgtctaaaccaatcagagcgctgGCAGAAATCGCCGTGCCCAGCAAACCCAGTGACACTCCTGCAGACCTGACGCCAGACGAGAGCACCATGTGGGGCGCGCGCTACAACTCGCTCCACTCGCTGGCCGCCTGCCCCAACAGCACCACGGACTTCGCCATGCTGGCTCAGTTTGTCTCCACTCCGTCAGCGCACAAGACGCCTTTCAACGGCAAGTTCTTCGAGGAGGACGAGGAAGACGAGAACAACTGCCATGGCAAAGAGAACGCCGACGAAGATGCTTTCATGAGACGCCAGCCGAAAAAACTCAGCCCAATCCTGGAGACGAGTCCGTCCAACGAAACGGCCTTCAGTCAGCTGGCGCCCTCCTCCGCAGGACTCGGCACCATCGTGGGCGAAGGGCTCGCCGCCGCACCGCACTGCCTGACCACTTCCTCCTGCACCACCATGGTGCAGCCCCCACCTCCGGCCGTGCTGTCCTTCCGAGACCAGACCCTCTGTCCCCCCGACTCCACAGACTCCACCACAGCCCCCGGCTGGGCGGTGTACGCCAGCCCCGAGCAGCCTCCCAAACCGCACCCGGAGAATTCGATCAGACCTAACGGCGAAGTTTTTGCCATCATGGAAGATGTGGACAAACCGTCCAGTCCAGAGCGGCTCCAGAAACCAGTCTGTGACGTCCCCATGAGCCCCGAGTGCGCTCTCGCAGCGGACTGGACGCTCGTCCGAAGCCCCGAGCGCACACCGGTGCCGGACCTGGACGCCTTCCTGAGTCCCTGTCCGCCCGGCGTCCCGGACGTCCCCATGAGTCCGCAGCAGCCGCCGTTCTGCGCCGACGTGCCCATGAGCCCGGCGCCACTCGGCGCCGAGGACGAACCCATGATGAGTCCGGAGAGGCTGAGGCCGAGCACCGACGCGTCCGTGAACACCAGGACGCCGGCGGCGGTGGTCCAGCTGGTGTCGGACCCCTGGGCCGATGAGGTCATCTCTCGTCTGCTGTCATCGCTGAGCCAGCCGCTCACCTCGCACCCCTGCTGCACCACCTGGCAGTGCAACGTACCCAACATCACCCCCAAGACCACCATCAGCATGGGAAAAGCGTCCCTGCGCGTCGACTGTGTCCTGGGAGAAGGGGCTTTTGCAACGGTGTACCAGGGTACCGACCTCCAGACCTCAGAGAAGGTGATGCTGAAGGTTCAGAAGCCGGCCAATCCCTGGGAGTTTTACATCAACACGCAGCTGGACGCGCGCCTGCCGCACAGCGTGCGCCACCTCTACAGCAGCATCCGCTCCGCCCACCTCTTCCATAACGGCAGCGTGCTGCTCGGCGAGCTTCACAACTACGGCACCCTGCTGAACGCGGTGAACATCTACAAAACCCTGAGTGACAAGGTGATGCCTCAGCCTCTCGTCATGTACTTCAGCGTCTGCATCCTGCACATGGTGGAGCAGCTGCACGCCGCCCGCATCGTCCACGCCGACGTCAAACCGGACAACTTCCTGCTGGGAGAGAGGTTCTTGGAGAACAAGGGGTTCGAGCCGGAGGACCTGGACCACGGCCTGGCCCTCATCGACCTCGGCCAGAGCATCGACATGGACCTTTTCCCAGAAGGCACCGCGTTCACCGCCAGGTGTTTGACGTCGGGCTTCCAGTGCACGGAGATGCTCAGCGGGAAACCCTGGAACTACCAGacGGATTACTTTGGAATCGCTGCGACGGTCCACTGCATGCTGTTTGGGACGTACATGCAGGTGAAGAATGAAGGCGGTGTGTGGGTGACAAACGGTGTATTTAGAAgGAACCCCCACAGCGACTTGTGGCAGGAGTTCTTCCACACGCTGCTCAACGTGCCGGACTGCAGCTCCCGGCCGAGCCTGGGCCTCCTGCGCTCCGCCCTGGGGTCGACGCTGCGGCACAACTACAGCAGCCGGCTGCCGGCGCTCAAGAACCGGCTGacggtgctgctgctggagcGCCACAAGGCGGCGCGCAGATGACCCGCGTCTCCTCCGTCACTCGGGGTTAACCTTTAGCTCTTAATGCTGCGGTGAGATGTCACCGGAGGAGGCCTTTCAGCATCGGAATTTGTacaattagttttttattttttatttgcttttatcTTGTCAGATTTGTAattttattgaaaaataaaagttatgTGGAAGgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256311 lncRNA upstream 16568 33178754 ~ 33184837 (+) True G189156
TU256307 lncRNA upstream 47939 33153225 ~ 33153466 (+) True G189152
TU256295 lncRNA upstream 54812 33134521 ~ 33146593 (+) True G189143
TU256300 lncRNA upstream 57858 33140603 ~ 33143547 (+) True G189147
TU256283 lncRNA upstream 107125 33093849 ~ 33094280 (+) True G189136
TU256337 lncRNA downstream 9859 33238698 ~ 33239145 (+) True G189167
TU256345 lncRNA downstream 24824 33253663 ~ 33254113 (+) True G189171
TU256405 lncRNA downstream 58139 33286978 ~ 33287313 (+) True G189219
TU256404 lncRNA downstream 59022 33287861 ~ 33288937 (+) True G189218
TU256415 lncRNA downstream 64981 33293820 ~ 33352523 (+) True G189228
XM_039782728.1 mRNA upstream 73814 33099369 ~ 33127591 (+) True nt5e
XM_039780909.1 mRNA upstream 160236 32966197 ~ 33041169 (+) False mei4
XM_039780908.1 mRNA upstream 160236 32975954 ~ 33041169 (+) True mei4
XM_039780910.1 mRNA upstream 191634 32975954 ~ 33009771 (+) False mei4
XM_039781369.1 mRNA upstream 434402 32576456 ~ 32767003 (+) True myo6a
XM_039781465.1 mRNA downstream 2195 33231034 ~ 33238327 (+) True LOC120546516
XM_039780901.1 mRNA downstream 51072 33279911 ~ 33286940 (+) True LOC120546153
XM_039782540.1 mRNA downstream 99253 33328092 ~ 33386989 (+) False pex7
XM_039782541.1 mRNA downstream 99253 33328092 ~ 33386989 (+) False pex7
XM_039782542.1 mRNA downstream 99253 33328092 ~ 33386989 (+) False pex7
TU256147 other upstream 579141 32576478 ~ 32622264 (+) False myo6a
TU255816 other upstream 1420367 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 1591304 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 1697177 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 1700351 31500835 ~ 31501054 (+) True LOC120547351
TU256417 other downstream 99264 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 225157 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 412781 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 534626 33763465 ~ 33763626 (+) True LOC120547364
TU256542 other downstream 536662 33765501 ~ 33771373 (+) False LOC120546444

Expression Profile