RNA id: XM_039781493.1


Basic Information

Item Value
RNA id XM_039781493.1
length 1488
RNA type mRNA
GC content 0.45
exon number 9
gene id atp6v1d
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23640875 ~ 23644644 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGATCATCACGGAGTCTGTCAAGATCACGAACATCAGCTCGATCAAGGCTTCTAAACCTGCGCGGAAAATAACGTGTTTTCTGTGTTAGGTATATAGtttaatacaatataatacaagCTAACGTTTGAGTGTTAATATTAGGAAAAGGAAATAAACAGAAGACCGCAATCATCGACCAAAGGACGAGAAGATGTCTGGAAAAGAGAGGATCGACGTGTTCCCCTCCAGAATGGCTCAGACCATCATGAAGGCTCGGCTCAAAGGGGCGCAGACCGGCCGCAACCTGCTTAAGAAGAAATCTGACGCCCTCTCCATGCGCTTCCGTCAGATCCTCCGCAAAATTATCGAAACTAAGACTAAGATGGGAGAGGTGATGAGAGAGGCGGCCTTCTCTTTGGCTGAAGCCAAATTTACAGCTGGAGACTTTACCACAACTGTAATCCAGAATGTCAACAAAGCCCAAGTGAAGGTCCGAGCCAAGAAAGACAATGTGGCAGgtGTCACCCTTCCAGTTTTTGAACACTACCAAGAAGGCGGGGACAGTTATGAGCTGACTGGTCTGGCCAGAGGAGGAGAGCAGCTCTCCAGGTTGAAGAGGAACTACGCCAGAGCTGTTGAGCTGCTGGTGGAGTTGGCCTCCTTACAGACATCTTTTGTCACGCTGGATGAAGCCATAAAGATTACCAACCGCCGTGTCAACGCTATTGAGCATGTGATTATTCCCCGCATTGATCGGACCCTCACCTACATCATCACAGAACTGGATGAGAGAGAACGAGAGGAGTTCTACAGGCTTAAGAAGATccaagagaagaagaaacagcTCAGGGAAAGAACAGAACTGGAGATTGCCGAACGTCTGGCTAAACTGGGTCCCATCGCAGAGCCCACCAACATGCTGATGGAGGAGAGGGATGAAGACATGCTGTTCGAGTGAAGCGCTCTCATGGCAGACGAGTCACTGACTTCCCCCCCAACATCCTATTTATTCTGTGCCTCTCAGGCCATGTCTATGTCCTCTCATGCAAATGAtgaaagttgtttttttgtgtacttGTCTGTGATGATTTGTTCTATTGTTTCAGTGCTGGATGATGTGTGTTTCCAGATTTTGTCACTGTACAGAACAAACACTTGGCTGTTTACCCACAAGGGAGTCAGTTCACTATTATAAAATGATCTAAACAATAAGAATATAAGTATGTTTACACATGGTTTGCGAGTCAAATTAAAGAAGCATTCCGTGTGACTGATCAACTTGTAGATATTTTAGGTTCCTCACAACATTAAGAGCCATTGCATGCTGTAAAGTTTAAGGTGGTTGTAGATTTCAAAGTGTGTGCGAGTCTGTGTTGTGGAGGTTGTTGTTACCTCATTTGAGGATGTTTACCATTGCCCAGGAAACCCTAAAGTGACCCTGCTGTAAAATGTAGTGTGCAAGTAAACACCCAACACTTCATCCAAATAAAGATGGTATCAGCATCCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K02149 ATPeV1D, ATP6M; V-type H+-transporting ATPase subunit D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253166 lncRNA upstream 33340 23602636 ~ 23607535 (+) True G186882
TU253175 lncRNA upstream 76580 23562276 ~ 23564295 (+) False tcte1
XR_005636851.1 lncRNA upstream 134311 23475699 ~ 23506564 (+) True LOC120546283
TU253107 lncRNA upstream 201355 23438240 ~ 23439520 (+) True G186841
TU253109 lncRNA upstream 205524 23435136 ~ 23435351 (+) True G186843
TU253189 lncRNA downstream 2935 23647579 ~ 23649568 (+) True G186901
TU253190 lncRNA downstream 5752 23650396 ~ 23658430 (+) True G186902
TU253196 lncRNA downstream 22293 23666937 ~ 23668127 (+) True G186905
TU253301 lncRNA downstream 184881 23829525 ~ 23861934 (+) True G186954
TU253309 lncRNA downstream 223636 23868280 ~ 23925648 (+) True G186961
XM_039781487.1 mRNA upstream 16737 23611009 ~ 23624138 (+) True rbm25b
XM_039781488.1 mRNA upstream 16737 23611009 ~ 23624138 (+) False rbm25b
XM_039781485.1 mRNA upstream 43476 23589968 ~ 23597399 (+) True slc35b2
XM_039782077.1 mRNA upstream 52361 23578378 ~ 23588514 (+) False nfkbie
XM_039782884.1 mRNA upstream 76446 23559498 ~ 23564429 (+) False tcte1
XM_039781674.1 mRNA downstream 385409 24030053 ~ 24068592 (+) True tmem121ab
XM_039782471.1 mRNA downstream 500353 24144997 ~ 24146762 (+) True LOC120547070
XM_039781257.1 mRNA downstream 510843 24155487 ~ 24186456 (+) True extl3
XM_039781258.1 mRNA downstream 518558 24163202 ~ 24186456 (+) False extl3
XM_039781259.1 mRNA downstream 562682 24207326 ~ 24215960 (+) True nt5c1bb
XR_005636956.1 other upstream 51186 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 52361 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 1575286 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 1693875 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3780670 19856735 ~ 19860205 (+) False kif25
TU253325 other downstream 434959 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 862269 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 1359375 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 1575224 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 2383416 26028060 ~ 26030400 (+) False nudt14

Expression Profile