RNA id: XM_039781524.1


Basic Information

Item Value
RNA id XM_039781524.1
length 1576
RNA type mRNA
GC content 0.43
exon number 5
gene id emc7b
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25597678 ~ 25604734 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagtgacgTCATTGTCAGCAGCGACAGCTGATGTGCAGAGTCTTCCGCTCCAGATAGCCGCTTCCGCTTCTTCTCCAAACTGCTCTTGAATAGACTTCATTTTAATTTGATAAAGACAGCCAATATGTTGCACAGGGAAAGAATACCGCTGCTATGGGGTTTCTTTCAGGCTGTGGTCGTCACGGCGTGGTGTTTCACTGATATGGAAACGGGGCCTGGCGCAGGTGTATCGACACAGGCGAACGGTGATCGGTTCAAAATCGAGGGAAGAGCGATAGTTCCGGGGTTGAAAACACAAGACTGGGTGTCCACGGCCAGAATCCTGGTGGAAGGTGAAGAATACGTGGGCTTTTTGAGAACTGATGGAAGTTTTGCCGTGAATGACGTGCCCTCAGGATCCTACGTTGTGGAAATTGTCTCCCCGGCCCATAGGTTTGAACCAGTACGGGTTGACATCACATCCAAGGGCAAAATGAGGGCGCGTCTTGTGAACTACATCAAGACTTCAGAAGTAATTCGCCAGCCATATCCCCTTCAAGTCCGGGCTAATGGCCCTCACACCTACTTCATGAAGAGAGAAACCTGGGGCTGGACAGACTTTCTCATGAACCCAATGGTTATGATGATGGTTCTGCCCCTGCTGATCATTGTTCTACTGCCCAAGGTGGTCAACACCAATGACCCAGAGATGAGAAAGGAAATGGAGCAGTCCATGAACATGCTGAACCCCAACCCCGAGCTTCCAGACGTCTCTGAGCTCATGACCAAGCTCTTCTCCGGCTCCAAGGGCTCCAGCaaggcaggcagcagcagcagcaagggcACCAGGCCAGCTGTCAAGAGGAGGTAGTACTGTACTGTAGTCCAGTCAATCGGCCTAAAAAAAAGCTCGAGTTATGCCATGGAAGCAAGATTTTTAAGtgtcatttttttcctctgGGTCTATTGTACAGTTTTCTTTATTAGATGTTTTAAGCACATCTTGATTTCTAATATGCTATtggaaactgagaaaaaaataagattTCTTTTCATACTGCACTGATAGAAATTTCTTAAACCCCTGCAAAAGCTGTTATCCTTCATTTGCTCTATACTTTCTACGTGTAGCTCTACTACTCATCCATCTTTTCTGTGCTAACCCTCTGGTGTGCATTTCCACTGCTGCTAACTCCACTACCTGAAAGAGAACAATATATAAagagtttttcttgttttttcgaTTTCAGTAATGTGATTGTGAATGAAGATTAATTGAATTTTAAGACTGATAAATTCTTATTTAAAAGCCTAgataaataaattgcaatgGTATATAAcacctttgtttttatttgagacCATCTTATTTGTTTGAGAGTGACCACATGGCCTTCTCATTTTTTTGAATTACTGCATGGCGTACTGTATGGCCAGAATTCACATACTGTACGTTACGTGCCTAAGCTGTATAAATTAAAATGGCAATTATTGGCAGTTCAAAGGATGAAAGAGCTGTGTGGTTGCTTTCAAGATCTCTAGAGTGTAACTTTTAATAAAGCAACAGTAAAGTCCATATTAAAGTGTGATAAATGTC

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K23568 EMC7; ER membrane protein complex subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253790 lncRNA upstream 70806 25526447 ~ 25526872 (+) True G187310
TU253776 lncRNA upstream 157135 25405717 ~ 25440543 (+) False G187299
TU253780 lncRNA upstream 163372 25434001 ~ 25434306 (+) True G187301
TU253774 lncRNA upstream 167770 25427095 ~ 25429908 (+) True G187299
TU253718 lncRNA upstream 258412 25338845 ~ 25339266 (+) True G187260
TU253870 lncRNA downstream 298204 25902938 ~ 25905402 (+) True G187378
TU253934 lncRNA downstream 324842 25929576 ~ 25935259 (+) False abracl
TU253932 lncRNA downstream 325314 25930048 ~ 25933947 (+) False abracl
TU253941 lncRNA downstream 362272 25967006 ~ 25967300 (+) True G187431
TU253938 lncRNA downstream 363472 25968206 ~ 25968925 (+) False LOC120546493
XM_039781523.1 mRNA upstream 969 25589228 ~ 25596709 (+) True katnbl1
XM_039782698.1 mRNA upstream 229341 25351229 ~ 25368337 (+) True gpr176
XM_039782515.1 mRNA upstream 250193 25341777 ~ 25347485 (+) True LOC120547103
XM_039781522.1 mRNA downstream 5263 25609997 ~ 25650563 (+) True aven
XM_039781525.1 mRNA downstream 176048 25780782 ~ 25809922 (+) False fmn1
XM_039781526.1 mRNA downstream 186034 25790768 ~ 25809922 (+) True fmn1
XM_039781532.1 mRNA downstream 226216 25830950 ~ 25836432 (+) True LOC120546553
XM_039781267.1 mRNA downstream 283535 25888269 ~ 25901582 (+) True clu
unassigned_transcript_1083 other upstream 377738 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 588271 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 1089865 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1514574 24079603 ~ 24083104 (+) True G186975
XR_005636955.1 other upstream 2009164 23578378 ~ 23588514 (+) False nfkbie
TU253978 other downstream 423326 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 671961 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 840916 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 840916 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 1052607 26657341 ~ 26657503 (+) True LOC120547357

Expression Profile