RNA id: XM_039781526.1


Basic Information

Item Value
RNA id XM_039781526.1
length 4670
RNA type mRNA
GC content 0.49
exon number 17
gene id fmn1
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25780782 ~ 25809922 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGTGGTGTCCCTCCATCTGTTCTGGGTGGCTTCTTTTTTGCCTTACGACTCACGGATCTGTCAGAAACTGTGGCTGAAGTCACCATCTGCTTCTAATTACACTGACAATCTGCAGGATGACATCCAATATGGTGCTCTGTAAATCACAACAGCAAGTATAAAGGAGCCCGAGGGAAAAGGAGGCAGAACTtggaagctacagccaggacTTGGAGCCGACTTTTAATTGTGGTTGAGCTCAGTCAGTCTAGCCGGCAGAGCCATGGAGCCAGGGCTTGGAAACTTTTCACTTGCATTTCAGTGACTAAGAGCTGCTTCCAGTTTTAAGTTTGAAAATGTAGTTCTCCGGTGAGACATGAAGGAGCTGTTGTAGCAGTGAAAGGAtaaatatatttcttttcaaCAAACTGGAGCAGAAACAGGTCGGAATTTCAGAAGCGATATGACTTTGACTTTAACATTTCTTGCATTTTTATTAATAGTAAGTGGAAGTTGCATGATCCTGGAAGCAGTTAAACAAAGTAGTGCATGCCATACATATGCCTGAAAACCAATAACACCTTCTTATCCTGGATTAGATTGCACCATGTTGCACTTCAGTCCAGATATGAACAGTTTAAATGGTAACCACAATGTTGACGTTGTGGGGAAAGCTTTATAACGTCACCACTTTCTTTTATGAGCGACTGATGAGTGATGGAGGAGCAAAAAGCCATCCTGAAGTTTTTCAGGACTCTCTCAGAGGAGGAGAATGAGGACATAATGCAAGACGACAAGGAGCGATCACAGAGTTttaatgtaaagaaaaatgGGGATGTGACTGTTGAAGATGCTGTGGAGAACAGTAGAGACTCTTTATCACATGTTATATTGCCTAATGAAGGGGAGAAGTTGAAATCTAACCCAGTTGGACATATAACTAGGAGAGAAGCAGGAAGTGACTCAGACATgatagaggaggagaggaataaTGTCAACCTAACAGAGCAGCAGAGCGTGGCTGTGAACGCTGAGAATGGCTCAGAGAAACAGAGCGCTGCAACAAATCAAGACCAAAATAAGATGCCAGACGGACACTGTGACAAAGTTAACAGCTGCAGCAAAGAAGGTTGTCACATATCGGAGAACTCGCTGGATGAATGTGCCTTGAAGGAATCTCTGCAACCAAATACAGGTTGGGATTGTGTTGCACCAGTCCGTCTCAAGCAGGATGACACTGAAGAAAACGACCAGAGAGGAACAAAAGACTATGAAAAGGTTCACTTCAGGGAAGATGTCACGAGTATTTCCAGTTCAGATGTGGGTTTTGACCCCGAGGAATCTGCCAAAAGTAGATCTGAAACCAAACATGTAGTGATAGCGTCGCCTCGGACAGGACCTGCAGTTGAGGAAACGGTTGAACCGATAGTAACACCCACACTGGAGCAGACCAGTGGCCCTTCCTGCTTtacagatgatgatgaagaggagagggCAGGTGCAGAGGAGGacagcgaagaagaagaagaagagaaaagagatgcATTTCCAGACTTCTCCGCCCAACCTCACCATCCTCCCAGCCCAAAAGGCACTTCAAATATTTGTATAACATCTGCAGCTAACAACCCTCCGCCTGGATCCACCTTCACCAGAGCCACCTTCACCCCAGGCTCCCCCACCGACAAGCCGCTCCCGGCCCTCTTCAGCGGCCTGAGGGTCCTGAGGAAGGGTGTGGTTGGGCCCGAGCATGACACCGTGGCCCAGATCAAACCTTCATCTCAAGGAGCAAGGAGGGAAATGCACCCAGAGAGGCAAGGGGATGCTAAAGTTCAGGGGAGCTTCCTGGACCAGATCTCCAATTTACTGAACAGGGAAAAGAGaggagatgaggaagaggagagggaggaaatgGAGGCTGAGGGAGACCAGGATGAGAATGAGATTGAAGAAAGTCAAGAGGATGCGAGGAAAGACCTTGAAACCGAGGCAGATGTTTTACGCGAGTCCACGAAACCTTCTCTGTCCAGTGCAGAGGCTGCATTCGATGCCTTCAAAGCTTTCTTCACCCCAAAGCCTTTGAAGAAGGACCCAGCGGAGAAGGTGGACCTGGAGGCCGTGAGGAAGAAGATTAGAGCAGATAAAGATGTGCTAAGAGTGCTTTTTGAGAGATCCTCCAAAAAGACGCCAGAGAAGAAAGACTCACCTGATGGCAAATCAGAAGCAGCCACctcaggagagggagaggaaagaacTCCTGGTCGTCTACAAGCTGTCTGGCCACCACTTAAAGAGGAAAAGGTTGGGCTCAAGTACACAGAAGCAGAGCACCAGGCTGCTCTCCTGCAACTGAAGAGAGAATGTAAAGAGGAGCTGGAAAAGTTACAGGAGGACTTTGGTCAGGAACTCTCCCGACTGAGGGTGGAGAACGAGGACAATGTCGCCCGTCTGGAGCTCACTCTGGCCGAGCTGCAGGCTGAGCTCTCCCAGGGTGGGACCCGCCAACGTGGGGAATGCAAAGATGTCGCTGTATCAACGGGAGATGACTTTTTAAATAAGTCTTTCCGCACGGTCTGCATCCAGACCGACCGGGAGACATTTGTAAAGACTCCTGAGGATGGAGAAGGTGCGGGGAGAGCCTACGCGAGCCCTCAGCAGCAGAAGGTGACCCCCAAAAAGTTGGACCTGGCTTCTATCAGCCTCAGCCTGGCCGGGCAAAGAGACGATACTTCATCTTCCCCATCTTGTGACCCTCCATCCCAAACTCTTCCTCCACCTGGAACTGTGCATCCTCCATCAGAACAACCACCCGCTCCTTCTCAGACCACCAATACAGACaatctgcctcctcctcctcctcctcctcctcctcctcctccacctccgcCTTGTTCGTCTTCCCCCCTAAACCACATGCAGTCAAATGGCCCTCCACcgccaccacctcctcctccatccatgcctGGCCTTATaccccctccacctcctcctcctcctccatccatgCCAGGCTTAGCtccccctccacctcctcctcctccagttgGGGGCTTCAATGTTGAAGTACCTCCCAGGAAACCGACAGTGCAGCCTTCCCGACCCATGAAGCCTCTTTACTGGACCAGGATCCAGATCCAGGACAAGAAGAACAAGACACTGTGGAACGTTTTAGAGGAACCAAATATAATAAACGCCAGCGAGTTTGAGGATCTCTTCGCCAAAACCACCACACAGACCAAGAGGAAGCCGCTGGCAGAGGCTTACCAGAAGAAAGCCAAAGCCAGGAAGatcaTTAAGCTGTTGGACGGGAAGCGCTCTCAGGCCGTAGGCATCCTTATATCTAGCCTCCACCTGGAGATGAAAGACATACAACAAGCTGTCCTGGCAGTGGATCACTCTGTGGTGGACGTGGAGACAATTGAAGCACTGTATGAAAATAGAGCGCAGCCGGAGGAACTGGAGAGAATCAAGAAACACTACGAGAcgtcagaggaagaggaagttaAACTGCTGGACAAACCTGAACAGTTCCTGTATGAGCTGTCTCAGATCCCAGAGTTTGCAGGCCGAGCTCACTGCATCATCTTCCAGTCGGCCTTCATCGATGGGATCGCATCCATCCAACACAAGCTCAACACAGTTTCATCTGTCTGTAAGGCTCTGCTGGAGAGCGACGGTGTGACGGAGGTGATGGGACTGGTGTTGGCTCTGGGGAACTACATGAACGGAGGCAACAGGACCAGAGGTCAGGCCGATGGCTTTGGCCTGGAGATTCTACCCAAACTGAAGGATGTCAAGAGCAAGGACAATCGTATCAGCCTGGTGGACTACGTGGTGTCGTACTACCTGCACAATGTGGATAAGCACGCCGGCACAGACAAGAGTATCTTCCCACTTCCTGAACCTCAGGACGTCTTCCTGGCTGCACAGGTCAAGTTTGATGACCTCAACAGAGACCTGAGACAGCTCGGACGAGATCTGACAAGGTGCGAAAAAGATGTACAGAAGGTTTGCTCTGATTCTCCTGGAAAAAACCTGCAGCCGTTTAAAGACAAGATGGAGGCTTTTGTTCTCAGCGCAAGAAAAGAACACGCAGAAGCTTCCTATCAGTTGACGACTGTACAAAAAAGTTTTCAGGACTTGGTTCTGTACTTTGGACTGAAGCCCAAATCGGGAGAGAAGGAGGTGACCCCCAGTCATCTCTTGATGCTCTGGTTTGAGTTTTGTTCCGACTTCAAGGCCAGGTGGAAGAGGGAGAACAAGACCATCTCTAACGAGAGATTAAAAGAGGCTCAGCTGTCAGTGAAGAGAATCACAGCGGAGAAGAAGGTGGAGACCAGAAAGATCAACCCCAACAGCCTGaaagagagactgcgTCAGAAAGAAGCCAACATGTCTTCAACATAGAGACCGACGAAAGGAGGTATACAAGACTGATACATCGTGTTCATCCCGCTAGATGTGGACGACGATACCAAACCAACTGTTTATTAGTTAACACAAGATTCtctatagatttaaaaaaatatatattacttttacttgacaATGTAGAACTTGCATTCATTATTCTgactttttatataatttgcTACCTAAATATGTAATAAATGTGCAATATTTAGAATTTATTATAAACTCCAGCTCCGTAATTATATTGAACTTTCTAGGCAAATTATTTGCATTGAT

Function

GO:

id name namespace
GO:0045010 actin nucleation biological_process
GO:0005884 actin filament cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253790 lncRNA upstream 263896 25526447 ~ 25526872 (+) True G187310
TU253776 lncRNA upstream 350225 25405717 ~ 25440543 (+) False G187299
TU253780 lncRNA upstream 356462 25434001 ~ 25434306 (+) True G187301
TU253774 lncRNA upstream 360860 25427095 ~ 25429908 (+) True G187299
TU253718 lncRNA upstream 451502 25338845 ~ 25339266 (+) True G187260
TU253870 lncRNA downstream 93016 25902938 ~ 25905402 (+) True G187378
TU253934 lncRNA downstream 119654 25929576 ~ 25935259 (+) False abracl
TU253932 lncRNA downstream 120126 25930048 ~ 25933947 (+) False abracl
TU253941 lncRNA downstream 157084 25967006 ~ 25967300 (+) True G187431
TU253938 lncRNA downstream 158284 25968206 ~ 25968925 (+) False LOC120546493
XM_039781522.1 mRNA upstream 140205 25609997 ~ 25650563 (+) True aven
XM_039781524.1 mRNA upstream 186034 25597678 ~ 25604734 (+) True emc7b
XM_039781523.1 mRNA upstream 194059 25589228 ~ 25596709 (+) True katnbl1
XM_039782698.1 mRNA upstream 422431 25351229 ~ 25368337 (+) True gpr176
XM_039782518.1 mRNA upstream 443894 25341777 ~ 25346874 (+) False LOC120547103
XM_039781532.1 mRNA downstream 21028 25830950 ~ 25836432 (+) True LOC120546553
XM_039781267.1 mRNA downstream 78347 25888269 ~ 25901582 (+) True clu
XM_039781268.1 mRNA downstream 78347 25888269 ~ 25901582 (+) False clu
XM_039782466.1 mRNA downstream 120080 25930002 ~ 25935271 (+) True abracl
XM_039781435.1 mRNA downstream 127379 25937301 ~ 25949410 (+) True heca
unassigned_transcript_1083 other upstream 570828 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 781361 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 1282955 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1707664 24079603 ~ 24083104 (+) True G186975
XR_005636955.1 other upstream 2202254 23578378 ~ 23588514 (+) False nfkbie
TU253978 other downstream 218138 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 466773 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 635728 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 635728 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 847419 26657341 ~ 26657503 (+) True LOC120547357

Expression Profile