RNA id: XM_039781532.1


Basic Information

Item Value
RNA id XM_039781532.1
length 2347
RNA type mRNA
GC content 0.44
exon number 18
gene id LOC120546553
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25830950 ~ 25836432 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACAGAAATCAACAACTAGCTCGACTGCTACGTCAGTGAGAGCTTTAACAcacatattttttgttattaagtTAATATTTTCTACAAAAAGCTAAAAGCATTTACAACCGAAAATTCTCGCCTCTAAAATGGGGGATACAAATAAACGAACTCGTCCGAAACGTATTTTTGTCAACGACGTCGACAGATATTCTTCCGAACACATCGCTAAGTTTTTATCGACATCATGCGTAGCCGGAGAGACCTCTGAGGAAGTCGAAGCAGAAGAGACCACCCCTCGAGGTGAACTTGCTTTCCAACTAGTGGGAACTGTGTCTCCTTCCACTAAAGATGAAAAACAAAGTTTTCTACTTGAACAGTACACGTCACCAACTCGAGACGAGCTTCTTGGGCACCTGCTGGAGTGTGACGTAGTTGTGTACAACATCTCAGAAAGTGCTACACTACAGCAGATTGAAGAAGCAACATGGGCAATCACAGCCCTTCATGACCAGATGGGGAACTTCACATCTCGGAAAATGTTCATTTTAGTCTCAAGCGTGATGACCTGGGCCATGACCAAGCCACAGAATCCGGAAGAAACACATGTTATGCTAGCAGAAGAAGAATACAGAAGAAAAAGGCCGCATCCCAGTTTCAAAAACCACAATAATCTTGAGAAACTTGTGCTCAAACTGGGTAGAGTTAAAAAGAACAAGCTAACTGGATATGTTGTAGGCTCTGGTGTTCAGTACGGAAAGGGAGAGAACCTATTTCACTACTTTTTCAAGGTGGCTTGGTTGATGCAGTTTCCTAAAGTTCCTCTCTTTGGACAGGGCACAAATCACATCCCCATGATTCACGTATACGACCTTGCAGGAGTGATCCATAACATCATTGAACTCAAGCCAAAGTCAAAGTACATTCTTGCGGTCGATGACTCCAAAAACACTTTAGAGGATATTGTAAAGATGATAAGCGCTACACTTGGGCCAGGAAAAATTAACAAATTACCACAGCAGGACGCCATCTCCATGAAAGCTTTTAAGCCAGAGGAATTGGAGTACCTAAATATCAACCTCCGCCTGGATGCTTTTATCATAAAAGACTCCATCCATCTCCGCTGGAAGTCTGAAGCTGGGATGGTTGAAAACATGGAGAGCATTGTGGAAGAATACAGAGACACCAGGCAGCTACTTccaatcagagtgtgCCTGGTTGGACCTCCAGCTGTGGGTAAAACCACTGTTGCAGAGAAGCTCTGCAGTCATTACCACATACACCACATCAAGATCAAAGAAGTCGTTGAGGAAAAGTTCTCACAACTGGTGGGGATAGTTAATGAAGGGAACCCTGAGAATGTCAGTGAAGAGGAAGTGGCGGCTGCACAGAAGGAATTGGAACTCTTTAACACAAGCAGGGAAATGAACGGAGGTCAACTGGCCGACCATCtggtttttgacattttgcaaaaaaagcTAAATTCAAAGCCATGCACAAACCAAGGATTTGTTCTCGATGGCTTCCCCAAGACTTATGAGCAAGCAAAGCTGATTTTCTCTGatgagGATATGGATAACCAGGATTTGATGCCCGAAAAACCTTTGTACAACAAGAACATCACTCCAGAGCATGTTTTTGCCCTCGATGCGACGGATGATTTTCTGACAAAGAGAGTTCTGGGACTTCCACAGAGTGTGGCAGAGAAAAAGTGCTACACCCAGGAGGAATTTGTCCCTCGCCTGACAAGATACAGACAATTCAGTACGGCTGAAGAAACCCTGCTGGACTACTTTGATGAGCTTGAGATTCACCCGGAACATATAGAGGTCAGCACAGGTGATTCAGAGTACACAGATGTTATCAAGAAGATCACTGAGATGGTGGGGATTCCGAAGAACTATGGCCCGAGTCcagaggagcaggaagaggaggaccgaaagaaagaggaagagaggaagcaGAAAGCGGCTGCAGAGGCGGCTGAGAAGAAACGCAGGAATGAATCTGCACTGGCCGAGATGGCTGCTCAGTATGAGGAGTGGCAAAAGAATTTGTCCGTGGTGAAGAGACAGGAGCACGATCTGCTGGAAGCTCACGCTCTTCCTCTGAGGAACTATCTCATGAAGAACGTGATGCCTTCGCTCACTGAGGCCATGTTGGAGTGCTCCAAGATCAAACCAGAGGACCCCGTCGACTTTTTGgCTGAATATCTACTGCGGAACAACCAAAAAGAATAACAAGGAAATTATCCCCATGTTTCATTTGAGGCTGTGTTTATCCTACAGTAATGTAATCAAAAGgtttaaaaatttaaaagagTGTTGCATCAGTGTTATAGGCTTATAATAAATATGAAGGAATTTGA

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0019205 nucleobase-containing compound kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253790 lncRNA upstream 304078 25526447 ~ 25526872 (+) True G187310
TU253776 lncRNA upstream 390407 25405717 ~ 25440543 (+) False G187299
TU253780 lncRNA upstream 396644 25434001 ~ 25434306 (+) True G187301
TU253774 lncRNA upstream 401042 25427095 ~ 25429908 (+) True G187299
TU253718 lncRNA upstream 491684 25338845 ~ 25339266 (+) True G187260
TU253870 lncRNA downstream 66506 25902938 ~ 25905402 (+) True G187378
TU253934 lncRNA downstream 93144 25929576 ~ 25935259 (+) False abracl
TU253932 lncRNA downstream 93616 25930048 ~ 25933947 (+) False abracl
TU253941 lncRNA downstream 130574 25967006 ~ 25967300 (+) True G187431
TU253938 lncRNA downstream 131774 25968206 ~ 25968925 (+) False LOC120546493
XM_039781525.1 mRNA upstream 21028 25780782 ~ 25809922 (+) False fmn1
XM_039781526.1 mRNA upstream 21028 25790768 ~ 25809922 (+) True fmn1
XM_039781522.1 mRNA upstream 180387 25609997 ~ 25650563 (+) True aven
XM_039781524.1 mRNA upstream 226216 25597678 ~ 25604734 (+) True emc7b
XM_039781523.1 mRNA upstream 234241 25589228 ~ 25596709 (+) True katnbl1
XM_039781267.1 mRNA downstream 51837 25888269 ~ 25901582 (+) True clu
XM_039781268.1 mRNA downstream 51837 25888269 ~ 25901582 (+) False clu
XM_039782466.1 mRNA downstream 93570 25930002 ~ 25935271 (+) True abracl
XM_039781435.1 mRNA downstream 100869 25937301 ~ 25949410 (+) True heca
XM_039781434.1 mRNA downstream 118818 25955250 ~ 25968925 (+) True LOC120546493
unassigned_transcript_1083 other upstream 611010 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 821543 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 1323137 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1747846 24079603 ~ 24083104 (+) True G186975
XR_005636955.1 other upstream 2242436 23578378 ~ 23588514 (+) False nfkbie
TU253978 other downstream 191628 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 440263 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 609218 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 609218 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 820909 26657341 ~ 26657503 (+) True LOC120547357

Expression Profile