RNA id: XM_039781550.1


Basic Information

Item Value
RNA id XM_039781550.1
length 3644
RNA type mRNA
GC content 0.40
exon number 1
gene id LOC120546560
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16483296 ~ 16486939 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGccagaaggggggggggagtcaGCCAGGAGGGGACATGCATGAATGAAGGTTATTATCATGTCATGACATTACATTTTAGGTCAAAAGTGGAGCCATGTGGACAGACTTTGGGGTATTTTTCTCGGATTCGGCAAATATTTTGATTACGTCGGGAATACGCGCAGAACAGTGACGCTTTCAATAGTAGGACATTAATTTAGATGTAAAGCTATTTACAGAGATATACCGACAAAATGTTGCCTTTGAGCGCGTGTTTATCCGGTGCTTTTGTGGTCAAaaaatttagatttagatttatgtCAGGTGacatttgtgtatatatacacacacacacacatacatacacacacacgcacacacacacacacacaaaatggaccTTGTGGTGAGATTATTTTGTTTAAACATGGAAGGTTTAttagaatatataatatattgtagTATAAACATTTAGGGTAAAAGCATGTGCTCACATATTAGTTGTTTTATCATAAAAATGACTGGGGTGGGAAAAATGCTTTGACTTTGACATCATGTTTGACAAATACTGTTATCCTAATCGAGTATGTGGAGTTGACACTGTTGCAGTATCTATATATGAAAAGTAGTCCTCAGGTTAGTTTTGATCATACAATGGTTTCActtctgtgaaagtgttgtggTGAAAGCAACAAACTTGCCGGAAAtaaaatttggaaaaaagcaTCAGATAATGAAGCCATGCAAAACGATGCAACGATGATGGAACTTCATTTGCATGTCAACAATACTGTTTCTTTGTGATTTCCTTTTGCAATGCATAAAAATGGAACATCTTGTTCCTCTAACTCGACTGACTGACACAATTTCCATCATCACTCGCTCGGTGCACATTCAGCTTGTCTGGCAGCAAGTTTGCAGCATGGAACAACTCAACTCCACTGTGGTCATTtctaacatctcctcctctcctggACATCCATCTCCTGCCTCCTGGGACTCCAGCAGTCTGGCCCCTGCAGTGGTGCTGTCCCTCTGTTTCCTGCTGGGAGTTCCTGGAAACATCGCTGTGATCATCCTCAGACCAAACTGGCAGCACATGTCCAGTTTGAGCCAGATTTTGATGCTGAATTTGGCCATATCAGACCTGGTCTGCCTGCTCCCCCTGCCCCTGTGGATTTACACTTTACTGTACAGTTGGACACTGGGCCTGGTGGCCTGTAAGCTCCTATCATATTTGCTGTACTGCAGCCTTTATGGTAGCCTAATGACAGTGACAGTGCTGAGTGTCCAGCGCTACCTAAAGGTGGTGTACCTGCAGAGGTACTTCCATCACGTAGGATTAAAGAGGGTGCTGGTTCTGCTCTGGCTGGCTGCAATGATCCTGTCGATCCCAGGTTTAGTGAATGGACAGTTGACCCCAGACCAGAACTGGATACGCTGCAAGTTTCGCTACTCTTCCCCGGCCCAGCAGGAGGCCGTGCTGCTGACAGAAACCCTGACAGGATTTCTTTGCTGTTTTGTCGTGGCATTTTCATACATCGGCCTTCACAGAAAAGTGAACCAGGCAGCTTTCTTCAACCACGCACAGACCACCCGGCTGATCACAAGTATTGTCGTGTCCTTTTTTGTCCTATGGATGCCATATCATATCACAAATGTGCTTGGCGTGGCTGCTGTTTCTCTCAAAAACAAAGGCCTGTCTAAGTTTTACACGGACAACAGGGACATTGTTGGAGCACTGGTATTTGTGAATAGCTGCCTGAATCCACTCCTTTATGCATTTGCGTTTAGAAACAAGTGCACTGTGTGCCAGAAAAGAGAACATTAATACTGTTGTTATTATGCAGAAGCTCACCGTTCCAGGAAGTCTAATCATTTGATTTAGTATGATCGATGAAAAGCCACCAGAGCCCAGATCCTGAAATAAGGTGTTTTTAGTCGAAATATCTAATCTTCCCTGCTGATTCACAGTTTGAGGGTGTGGTTCTCTCATTTGTAACAGAGAGCTGTGCATGATTTGTGGTATAATGAGGATTTTTTTGCTGATTACAACTGGTCCTCAGCCAGAgctgtaaaaataaaggtttGGTAAAATGAATCAGGCAAAGAGTTAAATAACAATGTGGAAATTATTGATTCATTTGCATTTAGAATACAACTTTGATTTCCTGTTCAACAtatgtttttaatgaatttagGTCATAATCTacagaaatatgtttttctaCTTCATCCATCATAcatgtattttttgtgtgtgtgtgtgtgtgttgtggatgTGTATGTGGTAAAACAACCCTTTCTTACTGATAATTACATTTTCTATCACATCTTAGCTTTTAAGGGAACAATCCAGTCAGAGGAAACAACAGTTAATGTAAAGATTGAATAAATGTTTGTGTTGGAGGGCATCCAACAAGAGGAATGACCATTTGTCTCTAATGTTTAgcaacagacatacacacaagaGGAAGGATATTGAGAGAGGAAGAGTGTGCTCTACTGATAATACCAGCAGATGTATAAACTAATTTATTGATTCCTTTATTCTTCTTCCTTTTGTCTATGACAAGTAGAAGCTAGACATATTGTCAGGCAGACTATTTCAGCTATTGTgttttgtatattgtatatatgtttgtttcCAGTAAACTGTGAAACACTGTAACAtataaaatgttacataaaacaaaagatATACAAGGATGAGATTGATAACCACTCATGTGTGGTAAATacaaagctacagccagcagctggctAACTTAGCACTAATCTGTTATCTTACCAGAGgctggctagctgtttccccgtttccaatcattatgctaagctaagctaaccggctgctggaaGTATCTTCATATTTatcgtacagacatgagagtggaaTCAATCTTCTCGTCTAACTCGCAGGAAGTAagaagtacagaagtattatcagcaaaatgtacataAAGTATCAAAAGGAAAAGTGCAGATAAATGTCCCTGCCATGTGACTGTTACAGTAGGCTATAtgattattaaatctttaaataaCTATTACTGATAAGTAAGCAGTCTTTTACTTTTGTAGTTGGTTGAGGTTGATGTCATTTTAACTagtttactgtaactgtagtttatatattttgtacagtatgtaactAACCAGAAACTAACAGCTGTCAAATAATTGCAATGGggtaaaagtacaatattctCTTCTTAAGTGAAGTGaggtagaagtataaagtgacATAAAATGgaagtataaataccttgttttttatgtacagtacttgagtacacGCTAACTGTTTATAATCAACTCTTTCTGTGACTGTGCTCAAATATTATGTTGGTCATTGTGAGGATGTCTTCTTCCTGGCTTCTCGCTACCGGCTTCTCGGTGCGTGACACATTGCAAAAACTAGGGCGACGGGCGCTCACCGTCGGCCCGACTTGGACCCATGGCCAACGGTCTACTTGGTGTGCCAGCACCTTTAACGGTACATGAGAAGCTGTCTCCCCGTGCAGTAGCAGTGTGCTTCCAAATATTCTTCTAGGGAATTTCTTTGTTATTGTTAAATGTTTCACTTAATTTCCTTTACGGCCTATGTGAATATGCTTAATTGCTGtgcagatcattttttaaataaagctcTTTGTTGTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250201 lncRNA downstream 48783 16434101 ~ 16434513 (-) True G184762
TU250183 lncRNA downstream 100817 16379445 ~ 16382479 (-) True G184755
TU250157 lncRNA downstream 126729 16291390 ~ 16356567 (-) True G184731
TU250156 lncRNA downstream 231427 16250197 ~ 16251869 (-) True G184730
TU250143 lncRNA downstream 318139 16146590 ~ 16165157 (-) False LOC120546332
TU250292 lncRNA upstream 35795 16522734 ~ 16523699 (-) True G184813
TU250252 lncRNA upstream 46501 16533440 ~ 16535319 (-) True G184801
XR_005636931.1 lncRNA upstream 109832 16596771 ~ 16605917 (-) True LOC120546751
TU250369 lncRNA upstream 186649 16673588 ~ 16675507 (-) True G184869
TU250380 lncRNA upstream 222816 16709755 ~ 16762688 (-) True G184877
XM_039782800.1 mRNA downstream 56415 16418550 ~ 16426881 (-) True elovl4b
XM_039782796.1 mRNA downstream 68099 16409299 ~ 16415197 (-) True LOC120547269
XM_039782799.1 mRNA downstream 74005 16401262 ~ 16409291 (-) False LOC120547270
XM_039782798.1 mRNA downstream 76099 16401262 ~ 16407197 (-) False LOC120547270
XM_039782797.1 mRNA downstream 76582 16401262 ~ 16406714 (-) True LOC120547270
XM_039781540.1 mRNA upstream 3711 16490650 ~ 16517874 (-) False snap91b
XM_039781539.1 mRNA upstream 3711 16490650 ~ 16517874 (-) True snap91b
XM_039781544.1 mRNA upstream 3711 16490650 ~ 16517873 (-) False snap91b
XM_039781541.1 mRNA upstream 3711 16490650 ~ 16517873 (-) False snap91b
XM_039781548.1 mRNA upstream 3711 16490650 ~ 16517872 (-) False snap91b
TU250064 other downstream 691738 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 1904127 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1984926 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2992168 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 3015231 13458616 ~ 13468065 (-) True fkbp1b
XR_005636881.1 other upstream 3711 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 342857 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 1275017 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 1275459 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 1275794 17762733 ~ 17762808 (-) True LOC120547353

Expression Profile