RNA id: XM_039781554.1


Basic Information

Item Value
RNA id XM_039781554.1
length 2127
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC120546567
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34343568 ~ 34354117 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctctctctgttctttctctagctcgcttcaccactttgttttatcattAGCAACACTCCACATAGCACTCTAGGATACTGTAGCAGTGGCTGTTATATCAACAAAAGACACTCTTGCCTGCTTTTTGTTCAGCTTTAATTTGTGCTAAtagttaaactttttttttagttatCTGCTCCGTCCAATCAACTTCAACACATTTACAATGAATTTTTCCCCAAAACAAACTCTTTTTACTTAGTTGATTCAATATTAAGAAGTATGAAAGTAAATAATGAATTTGACGCTGTATTGTAATTTACCATTGACATATTCATATAATTTATGACTTTTCCAGCAAGATGGGGAGTTTCATTAAAAGTTGGTTAATGGAAGGATTCTTCAGCTCTCCTGCCCCTCCACCCTCTCCTCTTGTCAGTAAACCTTGGAGGACAATTGACTGGGAagacaaacagagggaTCTGCAGTATGTGAAGGACTATAAACCTCAGACTGACAGGCAGCAGCTCAGGATACTTCTTCATGGTCCAGTTGGAGCTGGAAAGTCCAGTTTCATCAACTCTGTCCAAAGTGTCGTAGAAGGCAGAATGTCCAAAAAGGCTGAGGTGGCCAACATCTCTGGCTACACTCATACCAAAAAGTACAAAACCTACAAGATCCAAAAGGATGGACAGAACACCTTTTGCTCTTTGGTTTTCAATGACACCATGGGGCTGGAATGCAACAGCAACAGACGCAGAAAAGTCTATGTGAAGAATATCAAACAGGCGATGAAGGGACGTGTGAGAGACGGTTACacgTTCAATCCTGAAAGTAAGATATCAAAGGAGGATCAATACTACAACCGAGACCCAACTGCCAACGACAAAGTGCACGTTGTGGTTTGTGTTATTGATGCCAGCACAGTATCTCAGATGAGTCCTAAAGCTGTAGAGACACTGCAGGACATCAGAGATGAGGCCTCTGACCTGGGTATTCCTCAAGTGGCCATTCTCACCAAAATTGACATGATCTGTCCGGAGATTAAAAATGATGTAAAGAATGTCTACAAGAGCAAGATACTAAAGCAAAagATGGAGGAGTTCAGTGCAGCGGTGGGTTATCCCATGAACTGCATCTTCCCTGTGAAGAACTACCATGAAGAAATCAACTTCAACAGTGACATTGACTCACTGATCCTGAGCGCTCTGAGAGACATCATCAACTTGGGTCAATCTGAATGTTGAgacatatttttaaacacaGCATAAGAACGCTGTATTGCATTATGTCAAAATAACAATCTGTGACATTAATTCGTCATTCACTACTTTTTCCTGATAGCACCATATTTATGTGTTTTACTTTAAAGCCCCTGTAactcctgcctttattagatgATGGCTGAAAATACACGTTTCTCATTAAACTGTCGCCAGTGTCTAGCTGTACCTCTGAGGACAGTGATTCAAGAGAGCTTCCTCAGGACAGCTCTGAGCCTCCACCTGGGATTTATGTTATGTGTTATTCAGTCGAACAATCTAAACTCAGTGTGACTCTGTAGATTTGTTCTATCTATGACCACATAACTGtaaattaacacatttaaatgtatatttccatagatatacagtatctatgtaTATTTGTCTTgctttctgctgcagctccaTCCTGTGGAAGAATAATGTATTACAGTTCATTTCCACATAGAGGatctttgactgtatttcaTAAGCTACTCAAACTGAGCTTGGCAAGGCTAATTTTTCGTTTGCTGCTCCACATATCCTTCTTGGAGCCAACCCCTGCTGGCGTGCAGACTAGATTAGAACAAAAGAATGTTTATTCATGTAGCTTGAAAAGAGGTGACACCCACATGTTAGGATCTTGTTTGTGACCGGAAGTAACCTCAAAACACATGGATTTGGAAATAACGCCTTCTTTTGGGGGACAACGGACCAATGGAGAGAGTTTTCATCCAAGGAACCGCCCACAACTTCAAGAGAGTATATTTGTGAAACTTAGAAATGTTTGGGACTGTAAAATGTGAATCCACAAGGGAGAAGCATCTTTTCAGTCCGCTGCAGCGCAaaacttgtttttgtcatgtcattTTCTTATTAAATCTTTTTGTTAATCTTCA

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636883.1 lncRNA upstream 8240 34333258 ~ 34335328 (+) True LOC120546564
TU256745 lncRNA upstream 60893 34282045 ~ 34282675 (+) False G189467
TU256850 lncRNA downstream 40669 34394786 ~ 34438684 (+) False G189535
TU256853 lncRNA downstream 40669 34394786 ~ 34438684 (+) False G189535
TU256855 lncRNA downstream 40669 34394786 ~ 34438684 (+) True G189535
TU256857 lncRNA downstream 40669 34394786 ~ 34438684 (+) False G189535
TU256858 lncRNA downstream 53321 34407438 ~ 34438684 (+) False G189535
XM_039781379.1 mRNA upstream 10565 34318325 ~ 34333003 (+) True LOC120546450
XM_039781378.1 mRNA upstream 156013 34184189 ~ 34187555 (+) True LOC120546449
XM_039781552.1 mRNA upstream 169954 34110079 ~ 34173614 (+) True LOC120546562
XM_039781377.1 mRNA upstream 233455 34105395 ~ 34110113 (+) True LOC120546448
XM_039782427.1 mRNA upstream 277785 34055980 ~ 34065783 (+) True LOC120547054
XM_039781725.1 mRNA downstream 3765 34357882 ~ 34373502 (+) False LOC120546638
XM_039781726.1 mRNA downstream 3765 34357882 ~ 34373502 (+) False LOC120546638
XM_039781722.1 mRNA downstream 6008 34360125 ~ 34373502 (+) False LOC120546638
XM_039781723.1 mRNA downstream 6008 34360125 ~ 34373502 (+) False LOC120546638
XM_039781727.1 mRNA downstream 6008 34360125 ~ 34373502 (+) False LOC120546638
TU256520 other upstream 357092 33965583 ~ 33986476 (+) True G189305
TU256522 other upstream 404181 33932064 ~ 33939387 (+) True G189307
TU256516 other upstream 483165 33859146 ~ 33860403 (+) False LOC120546766
TU256542 other upstream 572195 33765501 ~ 33771373 (+) False LOC120546444
XR_005637066.1 other upstream 579942 33763465 ~ 33763626 (+) True LOC120547364
TU256875 other downstream 108791 34462908 ~ 34464897 (+) True G189544
TU256872 other downstream 128747 34482864 ~ 34503755 (+) True G189541
TU256921 other downstream 132307 34486424 ~ 34487177 (+) True G189570
XR_005637062.1 other downstream 165171 34519288 ~ 34519426 (+) True LOC120547360
XR_005637063.1 other downstream 170771 34524888 ~ 34525026 (+) True LOC120547361

Expression Profile