RNA id: XR_005636890.1


Basic Information

Item Value
RNA id XR_005636890.1
length 4812
RNA type transcript
GC content 0.55
exon number 9
gene id nhsl1b
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19429595 ~ 19541832 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTTGAATTTGAATAGACTTTGGGAGGCAACGTCTCCAGTGTACAGCAACACAAAGTCCCATGCtttgaaaaactaaaatatggCGGGACTGAGGGATTATACTGCCTCGCAAAAAATAGCAGCTAAAGGACGATGCGTTTTGGATTTGTTTTAAAGCTGTGAGTTTTTTGCGCGAACAGTTTTCGGTCCCGCTGGAGTTATTGGTATGAAATAATCATGCCCTTTCATCAGAGGAGCATTGAGCCGCGGCGTGTTTGTAGGTTATCGGCGAGGGATGGCTGGATACCAAGGGAAGAAACCGGGAAACGCAAGTTGCGAAAACCCGTGTTGTTCTCGTCATTGGATGAGGTTGGCTGTCATACTTTGACCAACATAATTCACCAACTTTCCGACCTTTCTCGACATGCCAGCGACATCTTCCTGGGCATCGAGATGGAGGCAGGGATGGTGTTCAGAAGATCCTGCAGGATTCAGGGGCGGCTGCAAAGGCTGCAGGGTGAAGTCCGCAAGTTTGATCCCAAGAAAATCAAAATCCcGGTGTCTAACCTGGATGAGGAGAGCAAGTGGACGGTTCATTACACAGCGCCGTGGCACCAGCAGGAGAACGTCTTCCTGCCAGGCAGCAGGCCGCCCTGCGTAGAAGACCTCCACCGCCAGGCCAAAGTCAACCTCAAGACCGCCCTGCGAGAATGCGACAAGTTGAGGAAAGATGGTTTTCGGAGCTCTCAGTACTACTCTCAGGGTCCCACCTTTTCTGACCCCTTACAGtccaccagcagcctgcaggatgaggaggaggatgaaaaTGATAAGAAGTCCACAGCTTCATCAGCTGAGGACGACAAATCTCAGCTCTCCTTGAGGCCCCAGACCCCGCAGGGAGGAGAGGGGTACGAAGTTGACGGACAGGTTGTATGGAATAAAGGCacacccctccccaccccagaGGAGAAGATGAGGCTGGCGGCCCAGGCCGTGCCCACAGACATAGTTCCCATCAACGTCACAGGGGCAGTGTTTGACCGACAGGCGAGCATCCGGCGCTCCCTCATTAACACTGACACCGTGTCCCGCCGGCCCAAGAAGGTCAAACGCAGAAAGACAATATCAGGGCTGCCTGACAACTTCAACCATGAGCTAGCAGCAAAAGGACACGGTGGAGAGCTACGGCCGCATTCCATGTTCATCCCGGGACAGTACTCCACCTTGGGCAGAGTTGGGAGCGTCAACTCAATGCTCCGAcgttcagagaccagagactctGGCTGCCAGACAGAAGAAGTAAAGATTGTACCCCCGTCCATGAGAAGAATCCGGGCTCAAAGAGGACAGGGAATTGCTGCTCAAATGGCTGGCATTTCTGCTTCCTCCTCAACAGGAAGTATATCCGTCTCGAGTAGTGACAGCTCTGGGATCTTGATGCTGCCACAGTTTAACAGAGACCCTTCCCGTTTTCACAGTCTGCCCCGACAGGGTGCTAGGGTGTCCCTCAGTGCTGACCCCATCTATAGCAGCACCCCCATCAAGCCAGAGGAGCAAACTACACCTCAAAGGCAAATTGGAAAGTTTCAGGTTGACGATACAGTGGTGCACATGAGACATGCCCCAAGGACAGGCACCCTGCCCAGGCCCAAGTCTCAGGAGGTGAGGGGGACACAGGCCAGTGATTGGGCTGGTGGTCCAGCATGTGTGGTCTCTCCACATGCTGCCTACTCCACCTCACTCATCCCTAATGCCACCATGTCAAGCTCCTCTGAGGTCATTACCCTCAACACCTCCGGTCAGCTCTCCCACTCCCCAGCCTCAGCTTACCCCACAGCTCGGCCGCTCAGTCTGGCTTCCTCCACCAGCACTGACCCCATGATCTCCAGTCCAACAGCCTTTACCCACAGCTCCACCTGCCCAGCTTTGGCCACTTCTACCCCCACTCATACACCAAAGGATGGTGGTCTGGTAGTCACAGCACCTGCTAGCGAGTCAGGGCACTCGGACAGCAGTATACACAGCCACAGCACCTTGGCCCCCACGCCACCATCCTGTCTGTCAGAGGAGCAGTGGATCTACGACACGCCAGAAAACGTGGTGGTTCCACAGCGCACTCTGACCTCCAGCTGCTCCACTCCTATAAACCAGCTGTATAGCAGCCTGGACCTCTCCTCCAGGACCACTACTGACTCCAGCTCCCTCTATTCCCAAGACAATGATGGATACTACACCTCCATGCACATGGACTCAGGCCTGCGCTCTCGCAGCCATGGCAGCGGGCATGGTGCAGCACCTGGACGGGCCACCCGGCACAGCATGTACGAGTGCCGTGAGATGGCCAATCAGGAAGACTCTGGAAGCTTGTACAGTGATCGCTCTCTGTCCCGCAGCATCTCCCTCCGCAAGGCCAAAAAGCCTCCGCTGCCCCCAGCTCGTACAGACTCTCTTAGACGCAAGACTTCTGTGAAAAAGCCCCTTGGAGGCGTTAGCGCCATCAGCGGTGCTAATGAGCCAAACAGAGCCATGCTTAATGAGACTCTAATTGCCAGCTTGCAGCAGAGCCTACAGATGGGGCTGAGAGGAGGGAAAGGAAAAGTGGCTTCACCTTCTTCACCTTCTCATAGCCCGAGCAGCGACTACGATGACCCTTGGGTGCTACGGCCACGCAGTCAGAGTAGCATCAGCGCAGGTAGCTCTGCAGCATCACTAGTAGCTAACGCCAACTGTGGCGGTGTGTCTAACGTTTACTCGCTATGCCACGTGACGCCTGCTCACAGTGACACCAGCAGCTTGCGCTCAGACTATGCTGATTCCTGGGGCTACTACATGGACTACCCTCGTAACCATGGAGACCAGAGGGCACAGACCCCACCGGCTCATGCCACCGATAACACGTCGGCTGGGGCTCACCCAGGAGAATTGCAAAATGGAGGTGAGCTTCTCAACAACAGTCAGGCCCCTGGAGCTCCAGGTCAGGAGGCAGGGGTGGCAGTGAAGCCCAAAATGTCCACCTCCTCACCAGACAGGGTGCATAGGCTGACCTCCCCATCTAGCGGCTACTCTAGTCAGTCCAACACCCCCACAGCTGGAACCCCAGTGCCCTCATTTGTCAGGTCCATGTCTCCCTCAGGCAGCCGGCCCAAGCCCAAAGTGCCCGAGAGAAAgtcatctctcctctcctctgtatCCCTGTCCTCCTCTTCCACCTCCCTTTCCTCCAACACCTCAGACTCACTTAAAAGCTCCGGACCTCCCcctccaccacccccacccttgcccctctcctcctcctcagctcccaCCACCCCTCTCAGCGCACCTCCACCCTTCCCTCCCCCTCTACCGCCATGTTCCAGTGCGGGCACTCCTCCGCCAGCTCCCCCATTACCAACCACTCCACAGGGTCCAAGTCTGAGCCCACCCCCTGCTTGCTCCTCCTCCCCAGAattccctcctcctccatcccctGAAATGCTAATCCACCCCAGTTCATCCTTCAATGGGAGCTTCAGTCctccccctccacctccccctccTGTCCCCTCCATGGGgccccctccacctcctccgcTGCCTGCTTTTGTCCCACCTTCCTCCTCCCCATCCTTTGTGAAGGCAGTGAAAGATGCTCCGAAACCAGCTCTTTCCAGCCCTACAAATTCACCTAAGCCCCTCATCACCCCGTTTGCACTGCAGAGTGTTCAGCTCCGCTCTGTTAAACTGCCAGAGAAGGAAATTAATGGCAGTTCAGACCACACCAAAGCTCAGAAAACAGGGGTGGACCTCCTTCAGGGTCTAAAGCCTCTGGCCCTGGAGAAGTCTCACTCCACAGAGCATCCCACTGTGATACACCTGTCAAACTGCTCCCCAGAAGAAGATTCATGTTACTGCTCACCTTCACCTGTGTCAAAGCTCTTAGAAGAGTTGTCTTTTGACTGCAGTATCACAGATGACACGCCAGACAGTGCGGTCATGAATGGAGAAGCCAAGAATCAGAGTTACTTTCTCTTAaacgaaaaagaaaaagttgaagGACAGGACTCATTGCCCCCACAGAGCTCCCAAAGCTCTCCTTTCAAACAGAAGCCCCCAGTAGTCTCCAAGAAACCCAAAATCTCTTTTCTCCCACCATTTAGCCCCCAACCAATCAATGACCAGGTTCCATCGCAGCATGAGGATACAACCAGCCTGTCACAAACAGAAGACCAAGTAGATGCGCCGCAAAGACAAATAAAGAAAGACGAGAAAGAGCGTAAAAGTGAGCAACAGGAGGCCGAGGAAACTTCAGACAACTTGGAGCTTCTAGCAGAGAGCAGTGAAACATCCACAGTCACCCAGAACGAGTCCTACATTTCTGTTTCTGCTAGCCAGTCAAGTCTTGACCATGGACTGTGTACCGATGGAGAGGCTcatgaagaggaagaggaagaggaggcggaagaggaggaggaagaggaggaggaggaggaggaggaggaggaggagggagatggAACAAGTAGCACGACTGGATCCATCAGCTCCAAGGAGGACGACACTGGTGAGGTGTTCTACTCCAGTACGGCTGAATCGTCGCCGGCCCCATCAGCTGACGGGGCCTCCGAGGAGAACATGGTAACCCCGACTCCCACGCGGCCCCGAACCACTGAGGACCTTTTTGCCGCCATTCACAGTCATAACTTTACTTAGCGCTGTCCCATCTGCAAGCATACACGTCTGTCAAATAGCTGGTCTCTGGAGTCTCCCAGCCTAGAGTGGCTTTTTCTGTTCCTCGTCAGTGAAGAGGCTGATTCAAGACGCAAAATGAGTCGAAGCGCAAGGTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251470 lncRNA upstream 2133 19354616 ~ 19427463 (+) False acbd3
TU251479 lncRNA upstream 55663 19368053 ~ 19373933 (+) False si:dkey-206f10.1
TU251440 lncRNA upstream 150239 19278107 ~ 19279357 (+) True G185656
TU251378 lncRNA upstream 345812 19082696 ~ 19083784 (+) True G185599
TU251371 lncRNA upstream 383489 19045414 ~ 19046107 (+) True G185593
TU251505 lncRNA downstream 14066 19553274 ~ 19554235 (+) True G185696
TU251494 lncRNA downstream 33392 19572600 ~ 19576899 (+) True zgc:193593
TU251496 lncRNA downstream 33392 19572600 ~ 19620783 (+) False zgc:193593
TU251523 lncRNA downstream 113029 19652237 ~ 19652575 (+) True G185711
TU251528 lncRNA downstream 152928 19692136 ~ 19693056 (+) True G185716
XM_039781585.1 mRNA upstream 2107 19417970 ~ 19427489 (+) False acbd3
XM_039781584.1 mRNA upstream 2107 19417971 ~ 19427489 (+) True acbd3
XM_039781565.1 mRNA upstream 16898 19403856 ~ 19412698 (+) True lin9
XM_039781566.1 mRNA upstream 16898 19404212 ~ 19412698 (+) False lin9
XM_039781564.1 mRNA upstream 26397 19391005 ~ 19403199 (+) True parp1
XM_039782811.1 mRNA downstream 33365 19572573 ~ 19574456 (+) False zgc:193593
XM_039781955.1 mRNA downstream 45494 19584702 ~ 19598107 (+) False si:ch211-225h24.2
XM_039781954.1 mRNA downstream 45496 19584704 ~ 19598107 (+) True si:ch211-225h24.2
XM_039782308.1 mRNA downstream 94292 19633500 ~ 19648130 (+) False acp1
XM_039782313.1 mRNA downstream 94292 19633500 ~ 19648130 (+) False acp1
TU251420 other upstream 221500 19204154 ~ 19208096 (+) False LOC120546624
unassigned_transcript_1081 other upstream 497209 18932316 ~ 18932387 (+) True trnae-cuc_27
XR_005637008.1 other upstream 1374670 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 1377525 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 1512348 17916853 ~ 17917248 (+) True G185237
TU251521 other downstream 95075 19634283 ~ 19648156 (+) False acp1
TU251678 other downstream 317527 19856735 ~ 19860205 (+) False kif25
TU252459 other downstream 2405535 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 2446571 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 4039170 23578378 ~ 23589689 (+) True nfkbie

Expression Profile