RNA id: XM_039781604.1


Basic Information

Item Value
RNA id XM_039781604.1
length 2546
RNA type mRNA
GC content 0.56
exon number 22
gene id LOC120546585
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 26733362 ~ 26792804 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acattttaaagctcCCAGCCATGCCGTCCAACAGTCCTGCAGCCGCTGAACCGCCCGAGACACCAGAGAACGACATCACCAATGatgtgAATGACGATGGAGCAGACCATGACAGTCCAGAGGAGGGGACACCAGCGAGCCCCCGCACCAAGCGCAGAGTGGGTCGTCCTGGCAGGAAACGCAAACAGCTGCTTCCTGAGATGGCGACCTCTGATCCCTGTGCAAACGCCCCCCCAACCCCGCCTGAGGAGCCGGagccctccccctcccctcgcAAGAAGCGTGGGCGTCGGAAACTAGAACAAACCGAGAAGAATAAGGACGAGCCAGACGACAGAAACTGCGACTCCCCCAGAGAGGGTGAGACTGGCAGGCTGCGGAGGAGGCCAGTCCCCAGAGTGACTTTCCAGGCTGGAGATCCATACTACATCagcaggagacagagagaagaatgGCTCAGCCGCTGGAAGATGGAGGCAGAGCGACGTGCGTACAGAGAGGCGGAGATGAGCATGATGGACAACCTATCAGAGGGCGACTTTCAAAAGGAGGAGTCAGCCAGCCCTGCCCCTCCCCattcacaacaacaaacagCCCCCGCCTCGCCTACGGTTGCCGTGACACCGGAGCCAGTTGCCAGGGGAGAACGGCCCCCGCCCAGGGAGATAGAGTACCAGGATGGCCGAGGTTTTGGCATCGGTGTTCTGGTGTTTGGGAAGCTGCGAGGTTTCTCTTGGTGGCCCGGCAGGATTGTTTCCTGGTTGATGAGCGGCCGAAGTCGAGCTGCAGACGGAACTCGCTGGGTGATGTGGTTTGGAGACGGAAAGTTCTCTGTGGTTTGTGTGGAGAAGCTGATGCTTCTCAGCTCTTTCTCATCTGCCTTCCACCAGCCCACCTTTAACAAACAGTCCATGTACCGGAAAGCCATCTTTGAGGCTCTGCAGGTGGCCAGTGTACGGGCGGGGAGGCCAGTTCCTTCCTGTGATACAAGCGATGATGCAGAGGGGGTGGACATTCAAACCAGACAGATGATAGAGTGGGCCATGACCGGCTTCCCACCCAATGGTCCACAATCACTGGAACCTCCAGAGGAGGAACAAAATCCATATAAGGAAGTGTACCCAGAGATGTGGGCGGAACCTGAGGCAGCGTACACGCCTCCACCCACCAAGAAACCACGCAAGAACTCAGCTGAAAAAGCAAAGATCAGAGAGGTGATCGACGAAGGGACCAGAGAGAGACTCATATGTGAGGTCAAAAAGAAGACCAGGAACATAGAAgATATCTGCATCTCCTGTGGAAGCCTCAACGTCTCTCTGGAGCATCCTCTCTTCTTAGGAGCAATGTGTCAGGGCTGCAAAAACTCGTTCCTGGAGTGCGCCTACCAGTACGACGACGACGGCTACCAGTCCTACTGCACCAtctgctgtggaggaagggagGTGCTCATGTGTGGCAACAACAACTGCTGTAGgtgtttctgtgtggagtgtgtggacCTGTTGGTCGGAGCCGGCTCGGCGGCGGCAGCCATCAAAGAAGACCCGTGGAACTGCTACATGTGTGGGTCCCGGACCGCCTACGGGTTACTGCGGCGACGGGACGACTGGCCCTGCAGACTACAACACTTCTTTGCCAACAACCATGAACAGGACTTTGAGCCAGCCAAGTTGTATCCTCCAGTTGCAGCAGAGAAGAGGAAACCAATCAGAGTTCTCTCCCTGTTTGACGGCATTGCCACAGGTCTGTTGGTGCTGAAGGATTTGGGCATGCAGGTTGACAAGTACGTGGCTTCTGAGGTGTGTGAGGACTCCATCACTGTCGGCATGGTCCGACACCAGGGTCGCATCATGTACGTGGGTGACGTACGCAAcgtaacacacaaacacATCGAAGAGTGGGGACCATTTGACCTGGTGATAGGAGGAAGCCCCTGCAACGACCTCTCCATAGTCAACCCTGCAAGGAAAGGCCTTTTTGAGGGAACCGGCCGGTTGTTTTTTGAGTTTTACCGTCTGCTGCACGAGGCTCGACCAAAAGCAGGCGACGAGCGTCCGTTCTACTGGCTGTTTGAGAACGTGGTCGCTATGGGAGTCAGCGACAAACGGGACATCTCCCGCTTTTTAGAGTGTAACCCAGTGATGATCGATGCCAAGGAGGTCTCTGCTGCCCATCGCGCTCGCTATTTCTGGGGAAACCTGCCAGGCATGTCCAgACCTCTGACACCCATGACGAATGACAAGCTGGACCTACAAGAGTGTCTCGAGCACGGGCGTACAGCCAAGTTTGAGAAGTTGCGTACGATAACGACACGCTCCAACTCTGTGAAGCAGGGGAAAGACGAGCATTTCCCCGTCTTCATGGACAACAAGGAGGACATCCTCTGGTGTACAGAGATGGAAAGGGTGTTTGGTTTCCCCGTCCACTACACCGACGTGTCCAACATGAGTCGTCTGGCCAGGCAAAGGCTTCTGGGACGTTCCTGGAGCGTCCCCGTCATCAGGCACCTCTTTGCCCCGCTCAAGGAATACTTTGCCTGCAACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254075 lncRNA upstream 306553 26430569 ~ 26431271 (+) False tfap2d
TU254064 lncRNA upstream 413090 26324516 ~ 26324734 (+) True G187536
TU254063 lncRNA upstream 422170 26315122 ~ 26315654 (+) True G187535
TU254024 lncRNA upstream 465229 26272368 ~ 26272595 (+) True G187508
TU254021 lncRNA upstream 476930 26257495 ~ 26260894 (+) False atp5mj
XR_005636872.1 lncRNA downstream 91649 26879446 ~ 26885536 (+) True LOC120546372
XR_005636870.1 lncRNA downstream 92924 26880721 ~ 26885536 (+) False LOC120546372
XR_005636871.1 lncRNA downstream 92924 26880721 ~ 26885536 (+) False LOC120546372
TU254247 lncRNA downstream 99910 26887707 ~ 26888304 (+) True G187672
TU254272 lncRNA downstream 128895 26916692 ~ 26918285 (+) True G187692
XM_039781608.1 mRNA upstream 21 26695431 ~ 26737803 (+) False LOC120546586
XM_039781609.1 mRNA upstream 10279 26695431 ~ 26727545 (+) False LOC120546586
XM_039781610.1 mRNA upstream 10279 26695431 ~ 26727545 (+) False LOC120546586
XM_039781611.1 mRNA upstream 10279 26695431 ~ 26727545 (+) False LOC120546586
XM_039782871.1 mRNA upstream 55108 26660751 ~ 26682716 (+) True LOC120547317
XM_039781613.1 mRNA downstream 8637 26796434 ~ 26830996 (+) True LOC120546588
XM_039781619.1 mRNA downstream 44031 26831828 ~ 26841973 (+) False LOC120546590
XM_039781618.1 mRNA downstream 45910 26833707 ~ 26842554 (+) True LOC120546590
XM_039781614.1 mRNA downstream 55975 26843772 ~ 26856893 (+) False LOC120546589
XM_039781615.1 mRNA downstream 55975 26843772 ~ 26855502 (+) False LOC120546589
XR_005636892.1 other upstream 10279 26695430 ~ 26727545 (+) False LOC120546586
unassigned_transcript_1084 other downstream 91736 26879533 ~ 26879621 (+) True trnay-gua_55
unassigned_transcript_1085 other downstream 92364 26880161 ~ 26880233 (+) True trnaa-agc_21
unassigned_transcript_1086 other downstream 99337 26887134 ~ 26887206 (+) True trnaa-agc_22
unassigned_transcript_1087 other downstream 102487 26890284 ~ 26890356 (+) True trnaa-agc_23
unassigned_transcript_1088 other downstream 193924 26981721 ~ 26981793 (+) True trnat-cgu_2

Expression Profile