RNA id: XR_005636893.1


Basic Information

Item Value
RNA id XR_005636893.1
length 2816
RNA type transcript
GC content 0.53
exon number 23
gene id LOC120546586
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 26695430 ~ 26737803 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTACACACCCTCTTACCCCTCTTTAGTACCACCTCGCCCGCCTGACGCCCGTTTCTGTCTCGTATTGGTGTTCTCGCTGTGTTGCTTCTTCTGTCCAACAACACTTCAGTTTGTTGATTCGCAGCGACTCTCCTTTATTGAGGCTCCTCTGTCCTGTGTGACCCCCTGACACATAGAGgatggtgatggaggaggggggacagagagacagagggagggggacTCCAGTGACAGCAGAAGCAGAGGGGAGACAGATTCTCGTAGAGCTTGGGGAGCAGAACTTGGATGCCATTTGTCTCTCTACGTATCGAACAGCCTGCAAGCTCCGATTCATACAGAAGAGATGCAACTTGCATCTGATCGACATATACAATGTGATTGAGGCGGTGCGGGACGCTGGTCTGAACGCTGTAGAGCTGAACGCCGGCATCTCTGTGACCAGACTGGAGAACTTGGTGTCCTCCCTGTTCAACCAGCTCAGCAAGCGCCtgcccaccacacacaccatcaaCCCGCGAGAGAGCACCGTCCTGCTAGTTGAATTCATACTGGCCGCCATTGAGGGTGAGCCTGACAGCCGTCTGACGGTGCTCTCTGTGAAGGCGATGTTGGCCACACTGTGTGGAGGGAAACTGGTAGATAAACTCCGCTatattTTTTCTCAGGTATCGGACTCCAGCGGTGTGTTGGTACAGTCCAAGTTTGATGGTTTTCTGAGGGAGGCTCTCAAGCTGCCCACCGCTGCACATGAAGGCCCGTCCTTTGGCTACACACCCACCTTAGCACGCTCATGCTTCCCACAACAGAAGAGGGTGATGCTCAACATGTTCCTCGATATCGTAGCTGACCCTCCTCCGTGTCTTGTCTGGCTGCCTCTCATGCACCGCATGGCCAACGTGGAgcatgtttatCATCCCGTGTCGTGCTCCTACTGTCGTGGCAACAGCATGACGGGCTTCCGCTATCGCTGCCTCCGTTGCCGCGGGTACCAGCTCTGCCAGAACTGCTTCTGGCGTGGCAATGCCAGTGGCTCTCATAGCAACCAGCATCAGATGAAGGAGCACTCATCCTGGaagTCATCCGCGACAAAGCTTGGCCGAGCCCTGAGCAGGACTCTGGgctgtgtgtcctccagagagCCCCCTCATCCTATTTACCCAGAGGAACCTGAGAGGACCCTCAACCTCTCCAACATAGTccCCTCTCGCCCCACTGGGAACACCAGTGAAGCCATGTTGCTGTCCTCATCAGTGCCCGAGTCCTCCAAAAGTTTGGCTGCCGCTCAGCGTATGAACGAGGAACACGCTCTGATCGCTGCGTATGTGAATCGCCTCCAGACCACCCCAAGtagTGTGGACAGTCCCAGCAGAGAAGATGAAGAGCACAAACTGATCGCCCGCTACACCTCCCGACTGGCAGAGACTGACAGCACAGGAgTGATACCTAACCGGAGCATCAACTTTGATGTGAACAAACAGAAGCGGGAGCTCATTGCTCAGCTGGAATGCAAAAACAGAGAGATCTTGGCAGAGATCAAACGTCTCCGTGTAGAGCATGACGCAGCGTGCCAGGCCAGTCCGGGGAAAGGCAGCACCAACCCGACTCTGCTGGCCGAGCTCCGTCTGCTCAGACAAAGGAAAGATGAGCTGGAGCAGAGGATGTcatctctgcaagaaagcaggAGGGAACTGATGGTACAGCTCGAGGGATTGATGAAGCTGCTcaagGATGAGGAACAGCGACAGGCAGCGCAGGCGGCTGGCTCTTCTCACGCCTCTCCTTCTCGACCGAGCCCATCAACCGTCCGCTCCGTAGGTGCTGCATCTCCCCAGGCTCACATGTACGCTCCTCAAGATTCACTCGCTGGGGTTGGTGGTGATGTACAAGAAGCGTTTGCCCAAGGCCCAAGAAGGAACCTGAGGAATGACCTTCTGGTAGCAGCCGACTCCATCACCAACACTGTGTCCTCACTGGTCAAAGAGCTCCActctgATGATGTtcgggaggaagaggagagattGCTAAACGGGAAGAATAGAGGTGCTCTCTCTTGTCTGCACTGCAGAGCAAGCTTCATAAATATGCCAGCTCATTAGCCGTGCTTTATGGAGCCCCTCCTCTATACAAGAGGACCGCCTGCAGAGACGAAGCTGTGAAACTACTTCCTGGTCTGCTCACTGAGCCCACACTAAACGCTTATAAGAATACTAACCTGCAGTACTAACCCACCGACCCCCCCGAacagccagacagacaggaggCCAGGGTTCAGCCCCACCGTTCAACACAcAGGTTAAAATGATCGCAGGACAAACAAAAACGGCAGAGTGATGTTTCATCAAAGCCAAAGAAGACTGACCCTGGTGGATTTAAAATATAGCTTCTTATTTAAATCGTTAGTCGGTGGGGGTTAGAGCTCCACTGccaatcaaccaatcacgatGCTGGACACCAAACGACCGCTGGGTTCCTACTGATGTATAgctgtgattctgtgtgtgtcttgtcacTGTGGATTTacttttgttttgatttgatcATGCATAGCTAAACGAGGAATCTGAAACCTActgatttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctctggTTTTCGAAGTGGTCAAGTAAGTGAGAGGGACACCGTGAAGAGATAGAAGGATGTGTTTAGGAAATTTGTGACGGATAGTGCAGGAACGTTTCAGGAAGGAGATCCAGGATGTAACCACAGTGGagagaaaaagtggaaaaacaaaAGAGAGTCAAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254075 lncRNA upstream 267604 26430569 ~ 26431271 (+) False tfap2d
TU254064 lncRNA upstream 374141 26324516 ~ 26324734 (+) True G187536
TU254063 lncRNA upstream 383221 26315122 ~ 26315654 (+) True G187535
TU254024 lncRNA upstream 426280 26272368 ~ 26272595 (+) True G187508
TU254021 lncRNA upstream 437981 26257495 ~ 26260894 (+) False atp5mj
XR_005636872.1 lncRNA downstream 151901 26879446 ~ 26885536 (+) True LOC120546372
XR_005636870.1 lncRNA downstream 153176 26880721 ~ 26885536 (+) False LOC120546372
XR_005636871.1 lncRNA downstream 153176 26880721 ~ 26885536 (+) False LOC120546372
TU254247 lncRNA downstream 160162 26887707 ~ 26888304 (+) True G187672
TU254272 lncRNA downstream 189147 26916692 ~ 26918285 (+) True G187692
XM_039782871.1 mRNA upstream 16159 26660751 ~ 26682716 (+) True LOC120547317
XM_039782872.1 mRNA upstream 16160 26660751 ~ 26682715 (+) False LOC120547317
XM_039782169.1 mRNA upstream 46745 26633495 ~ 26652130 (+) True rab10
XM_039782204.1 mRNA upstream 70311 26619981 ~ 26628564 (+) False lats1
XM_039781602.1 mRNA downstream 5817 26733362 ~ 26787797 (+) False LOC120546585
XM_039781606.1 mRNA downstream 5818 26733363 ~ 26787797 (+) False LOC120546585
XM_039781603.1 mRNA downstream 10279 26737824 ~ 26792804 (+) True LOC120546585
XM_039781604.1 mRNA downstream 10279 26737824 ~ 26787797 (+) False LOC120546585
XM_039781607.1 mRNA downstream 10279 26737824 ~ 26787797 (+) False LOC120546585
TU254123 other upstream 13368 26682895 ~ 26685507 (+) True G187574
XR_005637060.1 other upstream 41372 26657341 ~ 26657503 (+) True LOC120547357
TU254081 other upstream 246571 26445650 ~ 26452304 (+) False tfap2b
TU254083 other upstream 246571 26445650 ~ 26452304 (+) False tfap2b
TU254022 other upstream 417507 26276695 ~ 26281368 (+) False gareml
unassigned_transcript_1084 other downstream 151988 26879533 ~ 26879621 (+) True trnay-gua_55
unassigned_transcript_1085 other downstream 152616 26880161 ~ 26880233 (+) True trnaa-agc_21
unassigned_transcript_1086 other downstream 159589 26887134 ~ 26887206 (+) True trnaa-agc_22
unassigned_transcript_1087 other downstream 162739 26890284 ~ 26890356 (+) True trnaa-agc_23
unassigned_transcript_1088 other downstream 254176 26981721 ~ 26981793 (+) True trnat-cgu_2

Expression Profile