RNA id: XM_039781615.1


Basic Information

Item Value
RNA id XM_039781615.1
length 1001
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC120546589
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 26843772 ~ 26856893 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCCCTGCGCATGCGCACTGCTCAAAGCAGCTTAGGTGGGAGCGAGGCCAGTCTCGCAGTCTTTGCTAAGGCAACAGTCGGGCGTATAGCAACAGAAGCCCATCATCAGACACAACGGGGCGGCTGTGAGAGCAACGCGTCGCACTTCAGCCTTTTTGTAAGGTGGTCCACCACCACAACCATTTAAACAGctcacaccaaacacacagagtgcagGATGGCGGTGAATGTTTACTCCACCTCAATGACCATTGAGAACCTGAGTCGTCATGACATGCTGGCATGGGTCAACGACTCTCTGCAGCTCGCATACACAAAGATCGAGCAGCTCTGTTCGGGTGGTGCTTACTGTCAGTTAATGGACATGCTGTTTCCAGGATGCATATTAATGAAGAAAGTGAAGTTCAATGCTAAACTGGAGCATGAATACATCCACAATTTCAAGGTCTTACAGGCTTCATTCAAAAGAATGAATGTGGACAAgaTCATTCCTGTGGAGAGGCTGGTGAAGGGCAAGTTCCAGGACAACTTTGAGTTCCTTCAGTGGTTTAAGAAGTTTTTTGATGCCAACTATGACGGGAAAGATTACGACCCTGTAATGTCACGGCAGGGTCATGAGGGAACGCCGCCTCCACCCAACCcagGCCACATGAGAACATCTCCCACAGCACCAAAGAGTGTTCCTCCCCCCCAGAGGCAGACCAACACAGCACCAGCCCGCAGGACAACTCCTGTGAGCCGCAATGGAGGAGACGCTGAGCTTCTAGAGCTCAACCAGCAGCTGCTGGATCTGAAGCTGACTGTAGACGGactggagaaggagagggacTTCTACTTTGGAAAGCTGAGAGATATTGAGCTTCTCTGCCAGGAAAGCGAAAGTGACAGCCAAGTCATCAGCAAAATCATGGATGTACTGTACGCTACAGAGGACGGATTTGCACCGCCAGACGACGATGAAATTGAGGAAGGGGCAGAGCGAGACCAGGAGGAGTTCTGA

Function

GO:

id name namespace
GO:0008017 microtubule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254075 lncRNA upstream 412501 26430569 ~ 26431271 (+) False tfap2d
TU254064 lncRNA upstream 519038 26324516 ~ 26324734 (+) True G187536
TU254063 lncRNA upstream 528118 26315122 ~ 26315654 (+) True G187535
TU254024 lncRNA upstream 571177 26272368 ~ 26272595 (+) True G187508
TU254021 lncRNA upstream 582878 26257495 ~ 26260894 (+) False atp5mj
XR_005636872.1 lncRNA downstream 23944 26879446 ~ 26885536 (+) True LOC120546372
XR_005636870.1 lncRNA downstream 25219 26880721 ~ 26885536 (+) False LOC120546372
XR_005636871.1 lncRNA downstream 25219 26880721 ~ 26885536 (+) False LOC120546372
TU254247 lncRNA downstream 32205 26887707 ~ 26888304 (+) True G187672
TU254272 lncRNA downstream 61190 26916692 ~ 26918285 (+) True G187692
XM_039781618.1 mRNA upstream 1218 26833707 ~ 26842554 (+) True LOC120546590
XM_039781619.1 mRNA upstream 1799 26831828 ~ 26841973 (+) False LOC120546590
XM_039781613.1 mRNA upstream 12776 26796434 ~ 26830996 (+) True LOC120546588
XM_039781607.1 mRNA upstream 55975 26737824 ~ 26787797 (+) False LOC120546585
XM_039781299.1 mRNA downstream 4568 26860070 ~ 26878578 (+) True tmem214
XM_039781302.1 mRNA downstream 40878 26896380 ~ 26905243 (+) True esco2
XM_039780992.1 mRNA downstream 172603 27028105 ~ 27036677 (+) False LOC120546215
XM_039782373.1 mRNA downstream 217468 27072970 ~ 27407359 (+) True LOC120547023
XM_039781427.1 mRNA downstream 617714 27473216 ~ 27478075 (+) True c18h1orf131
XR_005636892.1 other upstream 116227 26695430 ~ 26727545 (+) False LOC120546586
unassigned_transcript_1084 other downstream 24031 26879533 ~ 26879621 (+) True trnay-gua_55
unassigned_transcript_1085 other downstream 24659 26880161 ~ 26880233 (+) True trnaa-agc_21
unassigned_transcript_1086 other downstream 31632 26887134 ~ 26887206 (+) True trnaa-agc_22
unassigned_transcript_1087 other downstream 34782 26890284 ~ 26890356 (+) True trnaa-agc_23
unassigned_transcript_1088 other downstream 126219 26981721 ~ 26981793 (+) True trnat-cgu_2

Expression Profile