RNA id: XM_039781715.1


Basic Information

Item Value
RNA id XM_039781715.1
length 5043
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC120546635
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34905991 ~ 34927163 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTGTCTGTTAATCTTTGACTTCAGTTGTTCCTTCCAAAGTTCAGAGCTGCTCTGTGATCACATTTCTTAAAGAACTCTTCAGTCTGAAGATGAAGACAGAGAGTTGAGACTGCAGATGAATCAAAAGACCTTTGAAAACCTCCTGCTGTCAGTTACATGTTTGTTATTTCTCCTGTTGGTTTCCTGGTTAAAGCTGCTGAATAATTTCACCGCCGAACGTCGACTTCATGCAAATTATTTTCACCATCAAAAGATGTGGACTCTGCTATGAATCAGTGTGAGGACAAAAAGGAGGGAGCTCCTCCCTCTAAAACCACTCTGTGCGGGAAACATGACAGCAAGACCAAAGCTCAGAGACCGGACTCTCCTGTATCAACCTGTGAATCCACAAAGAGTGACCGTTCTAAGGGTCGACCTTTTGACTTCAAACATGGACAGCAGTCTGATGACCAAAGCTGTGTGTCCATTAAAAGTGACCGGTCTAAGGGTCGACCTTTTGACTTCAGACATGGACAGCAGTCTGATGAACCTGTgagGATCAAACCACAGAAGCAAGACTTGTCTtttcccagctgtgtgtccatgaagagtgacCGGTCTAAGGGTCGACCTTTTGACTTTAAACATGGACCGAAGTCTGATGATCAAAAgATCCCTCAGCAGAGAGCAGATCCCTCTGGaatcagctgtgtgtccatgaagagtgacCGGTCTAAGGGTCGACCTTTTGACTTTAAACATGGACAGAAGTCTGATGATCAAAAGATCCCTCAGCAGAGACCAGATCCCTCTGGAATCacctgtgtgtccatgaagagtgaTCGGTCTAAGGGTCGACCTTTTGACTTCAGACATGGACAGACATCTGCTGATCCAGAGATCCCTCAGCAGAGACCAGATCCCTCTGGAATCacctgtgtgtccatgaagagtgacCGGTCTAAGGGTCGACCTTTTGACTTCAGACATGGACAGACATCTGCTGATCCAGAGATCCCTCAGCAGAGACCAGATCCCTCTGGAATCacctgtgtgtccatgaagagtgacCGGTCTAAGGGTCGACCTTTTGACTTCAGACATGGACAGACATCTGCTGATCCAGAGATCCCTCAGCAGAGACCAGATCCCTCTGGAATCacctgtgtgtccatgaagagtgacCGGTCTAAGGGTCGACCTTTTGACTTCAGACATGGACAGACATCTGCTGATCCAGAACTTCAGCAGCAGAGCTCAGATGTTTCTAGTGGTCAGTCTGACCCGCAGCATCAAACTGACCTGGACTCTATATTCATGGTGCTTGAGGAGAACATTGTTAGTTTTGTGAAGAATGAACTGAAGAAATTCCAGAAGGTTCTGAGTCCAGATTACCAAGAATGCTCAAAGAAACATAGGGAAGGTGAGGAGGTGGTGGATggcaaggaagaagaaaaaatgaagagcagcagagaggcatttctgaagattacactgcacttcctgaggagaatgaaTCACAAGGAGCTGGCTGACTGTTTGCAGAAAAGAACTGGCGCTGGAGCTCTCTTATGCCAGACTAAAATAAAGTCTGATCTAAAGAGGAAGTTTCAATGTCTCTTTGAGGGGATTGCCaaagcaggaaacccaacccttctgaatcagatCTACACAGAGATCTTCATCAAAGGAGGTGGGACTGCAGAGGTTAATGATGAACATGaagtcagacagattgaaacagcatccaggaaaccagacagacctgaaacaacaatcagacatGAAGATATCTTTAAAAccccacctggaagagatgaaccaatcagaacagtgatgacaaagggagtggctggcattgggaaaacagtcttaacacagaagttcactctggactgggctgaagacaaagccaaccaggacatccagttcacatttccattcaccttcagagagttgaatgtgctgaaagagaaacagtacagcttggtggaacttgttcatCACTTCTTTAAACACTTTAAAGAAACagaagaagcaggaatctgcaggtttgaagagttccaggttgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttccaaaacactgagatcctgactgatgttacagagtccacctcagtgggtgtgctgctgacaaacctcatcagggggaatctgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatttgatccctcctgagtgtgttgacatggtgacagaggtcagagggttcaaTGACCCACAGAaagaggagtacttcaggaagagattcagagatgaAGAGCAGGCcaacagaatcatctcccaTGTTAAAGCATCACGAAGTCTCCACATtatgtgccacatcccagtcttctgctggatcactgctacagttctggagaaCGTGCTGAAGaccagagaaggaggagagctgcccaagaccctgactgagatgtacattcACTTactggtggttcagtccaaacGAAAGAGcatcaagtatgatggaggagctgagatAGACCCGCACTGGAATGAAGAGACCAGAAAGATGATCaagtctctgggaaaactggcttttgagcaactgcagaaaggcaacctgatcttctatgaatcagacctgacagagtgtggcatcgatatcagagcagcctcagtgtactcaggagtgttcacacagatcttcaaagaggagagaggactgtaccaggacaaggtgttctgcttcgtccatctgagtgttcaggagtttctagCTGCTCTTCATGTACATCTGACATTCATCAACTCTGGTGTCAATCTGCTGTCAGAAGAAGAAACAATGTCCCGGCTGCCTAAAGTCTTCAGAGACAAACCTAAACCAACACATCTCTACCACTGTGCAGTGGACAAGGCCTTAgagagtccaaatggacacctggacttgttcctacgcttcctcctgggtctttcactgcagaccaatcagacTCTTCTACGAGGTCTGCTGAAACAGGCAGGAAGTAGCTCAGAGATCAATCAGAAGACAGCCaagtacatcaagaagaagatcagtgagaatctctctgcagagagaagcatcaatctgttccactgtctgaatgaactaaATGATCATTCTCTAGTTGAGGAGATCCAACAATACCTGGgttcaggaagtctctccacagataAACTTTCTCCtactcagtggtcagctctggtcttcatcttactgtcatcagaaaaagatctggacgtgtttgacctgaagaaatactctgcttcagaggaggctcttctgaggctgctgccagtggtcaaagcctccaacaaagctctGCTGAGTGGTTGTAATGTGTCTGGGAGaggctgtgaagctctgtcttcAGTTCTCAGCTCTGAGTCCTCCTGTCTCAGAGaactggacctgagtaacaacaacctgcaggattcagggtTGAACCTCCTGTCTGCTGGACTGGATAGTCCACACTGTAcactggaaactctcagGCTGGGTTTGTGTAAACTGTCATGgcgaagctgtgaagctctttCCTCAGTCCTCAGCTctgagtcctctagtctgagagagcttgacctgagtaacaacgacCTGCAGGACTCAGGATTAAAGCAGTTGTCAACTGGACTTCAAAGTCCACTTTGTACACTGGAAACTCTAAGTGTGTCAGGCTGTCTGATAAAAGAGGAAGGCTGTAgttctctggcctcagctctgagcttcaacccctcccatctgagagagctggacatgagctacaatcatccaggagtGTCAGGGGTAAAGCTTCTGTCTGCTAGACTAGAGGATCCAATCTGGAGGTTGGACACTCTCAGGGTGGACCATGGTGGACAGCAGTGGTTAAAACCTGGTCTGAGGAAATATGCCTGTGAACTCatactggacacaaacacagcgcACAAAAAGCTCAAACTGTCTgaaaacaacaggaaggtgacactATCAGGAGAGAAAGAACGGCCTTATCCTAACCATGCAGACAGATTTGACCGTTGCAGTCAGATTCTGTGTAGcaatggtctgactggtcgctgttactgggaggtcgagaggagaggagacattGATGTAGCAGTGAGTTACAGTGGAATCAGAAGGAAAGGAGAGGGCTCTGACTGCAGGTTTGGAAGGAACGATCAGTCATGGAGTCTAAACTGCTGTGATGGTCGTTACTCTGTCTGGCACATCAACAAGGAAACAGTCCtccctttctcttcctcctctgtctctaacagagtagcagtgtatgtggactgtcctgccggcactctgtccttctacacagtctcctctgacacaccgatccacctccacaccttcaacaccacattcacagAGCCTCTTTATCCTGGGTTTGGATTTGGGTTTGGTTTTGGGGTGGAGTCTTTGATGCTGTCACTGGACTCcgcagtgtctctgtgttcatTGTAGGACAGAAGAGAAACACTAATATTGCTGTCTTCTGGAGGAAATGCAATGCCACATGAATTACTCTCTAATCTTGAGTGATTGATCTGGAAAAAACTAAACCCTGTGTCATAtcatcacacatttttcttaaaacaatttCCCAATACATTTACAAAATTCATCTATTGttaggtagtctatatccacaaccttCCTCTTCCAGGATTGCCACGGTGCcactggaaattccgccgtatGTCCTTTTTTGGACCGATTTCTAtcaccttcctctttttttgtgtgttggctgagtactatggttaactgctcctcagatctctgcagggtaaatccagacagctagctagactatctgtccaatctgagtttttttgttgcatgactaaaactacttttgaacgtacacctgttccaccaaaacaagttccttcccgaggctatttagcagaggcaccggggCTCCATGCAGCGCTTAgtgccacccatgacgattgtgattggtttaaaggtcctatgacatgatgctttttggatgcttttatataggccttagtgg

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257137 lncRNA upstream 69587 34830676 ~ 34836404 (+) True G189711
TU257139 lncRNA upstream 74376 34830676 ~ 34831615 (+) False G189711
TU257138 lncRNA upstream 74376 34831124 ~ 34831615 (+) False G189711
TU256970 lncRNA upstream 169037 34708726 ~ 34736954 (+) True G189601
TU257156 lncRNA downstream 8354 34935517 ~ 35084911 (+) False G189720
TU257175 lncRNA downstream 22941 34950104 ~ 34950650 (+) True G189735
TU257176 lncRNA downstream 22941 34950104 ~ 34950321 (+) False G189735
TU257153 lncRNA downstream 32089 34959252 ~ 35014287 (+) False G189720
TU257172 lncRNA downstream 39168 34966331 ~ 34984803 (+) True G189732
XM_039781755.1 mRNA upstream 10457 34856836 ~ 34895534 (+) True LOC120546649
XM_039781757.1 mRNA upstream 10457 34882295 ~ 34895534 (+) False LOC120546649
XM_039781756.1 mRNA upstream 10457 34886610 ~ 34895534 (+) False LOC120546649
XM_039781758.1 mRNA upstream 14428 34856836 ~ 34891563 (+) False LOC120546649
XM_039781771.1 mRNA upstream 60899 34837198 ~ 34845092 (+) True LOC120546655
XM_039781773.1 mRNA downstream 1255 34928418 ~ 34941331 (+) False allc
XM_039781772.1 mRNA downstream 1256 34928419 ~ 34941331 (+) True allc
XM_039781791.1 mRNA downstream 260753 35187916 ~ 35193265 (+) True gje1
XM_039781788.1 mRNA downstream 277043 35204206 ~ 35345930 (+) True vta1
XM_039781789.1 mRNA downstream 277043 35204206 ~ 35345930 (+) False vta1
TU257129 other upstream 80821 34824042 ~ 34825170 (+) False LOC120546458
TU256938 other upstream 206747 34663015 ~ 34699244 (+) True G189582
TU256888 other upstream 298653 34592437 ~ 34607338 (+) True G189555
TU256898 other upstream 298653 34592437 ~ 34607338 (+) False G189555
XR_005637065.1 other upstream 335897 34569956 ~ 34570094 (+) True LOC120547363
TU257179 other downstream 82337 35009500 ~ 35010825 (+) True G189738
TU257158 other downstream 87232 35014395 ~ 35017163 (+) True G189721
TU257203 other downstream 218347 35145510 ~ 35147428 (+) True LOC120546683
TU257162 other downstream 231060 35158223 ~ 35166388 (+) True G189723
TU257244 other downstream 322578 35249741 ~ 35250635 (+) False G189769

Expression Profile