RNA id: XM_039781728.1


Basic Information

Item Value
RNA id XM_039781728.1
length 4812
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC120546638
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34357882 ~ 34373502 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttgtttataatgtttatgacacgtgacagtgtcatgtcactcttatgtagataccttcaagtaaagtgcaaCTAAAGTGGTTTTAGAGGGGCGCTATGCAAAAATTAAGCAAAGTTGCTGGCTTGGCTCGTAacttttagttttatttgaGAAAATGCATTGAACATGGGCGTGTTACAGCATTAAATCTAACAGTGTGTTCCATGTCCGTCGAAGCCAgcgctgggaatgacgtcacacccgagttgagtGCGTTTCATTAAACAAGTCGGAATTTCAGTGTAGTTTTGTTCTGTCCAGCTTAGCCACTgctagcaataccagttgataacaataCATTAGgctgttttttgtgcaaacAGAGTAACAACGTCCAAAGATAaaagttggacaggactgtgtgtacagctgatttaatgagacacaaataagacagaagtgctaataaactgtatattaCAATAGCTTTTACTGTTGATGCACGGcccagccatgttggattttgaggtTGCCTTTGCGCGGGGTACTGTGAGGTTATCTGACCTCAGAGGGCGTTCCATTTAAAGTTTCTGACTTGGAATTGGAAATTCaacttccgagtacaaatggaacgcaccatATCGCTCATATTTGTTGTTTTGGGACTCATTGGAAATCAACCTGTTTTGTTGTTTAAGTATGAGTCCGTGTTAgtacaatatatgtatatgcagAAGGAGAAATAAAGATTATAAGTATTATCAAATCATGATTATGTTACTGCTACCTCTCCTAAGTTCTAATGATGTGTGTaatggccctgacacaccaagccgataatcagCCGTCGACAGTCTGGCGAAGTGAGcgactcaagtctgttcggtgtgttctgtgccgtcgtACGTCGGAGGAGCTGtctgccttcattttggccgacctgacttgctgggtcggagggcgggcagtcggactcactccaccaaactgacctttgttgatctgaaatgaagacagattcagcaactgtatggcctatttcccACTTAAAATGCTTTCAGAAACAATTTTTCGTAAAATACAAGATCGTATTTCGAACAAGCCGCAATTACTATTGGCTGGAGAACCCAGACCCACGTGGTGCGTTGTCATTTCTGGTTTTCATTTttcgtattacgtctcgcgcacgtgCAGAACGTGCGCTCAAGACgccgtcgcttcggtgtgttctgaggcactttttggacctcggggagccgactgatcagtccgactgccttttctgccgatggtcagccgtcaggttggtgtgtcaggggcttaaAACGTTTTGTTTCCACAGACGGAGAGCAGAGTCTCCACTATCTAGTGCTCTGTCCATGAAGAGTGACTTTTCCAAAGACGAACCTCCATTCTTCAGTAATgaacctggaccctcagacacaaagAGTTATGGAAAACGGTTTCTAGTacagagagcagagtttCCAGTGTCCAGCGCTCTGTCCATGAAAAGTGACTTTTCCAAAGACGAACCTCCATTCTTCAGTGATGAACCTAgaccctcagacacaaaAGACAAAAGGAAACAGAGTCATGTTTTCATGGTTGAACAGCTGTCTGGTAACAGATCCAGAACAAGAGCTGGactgcagacagacagtcagaccaGCACTGTACAAAATCGTGTTCAGCATGAGGGGTCAGTTGAACAAAAAATCAGTCTGAAAAGCAGATTTGAACGTGTGGCTGAAGGAACTAAtgaaacaggaagtaaaacccACCTCAAGAAGGTCTACGTCACGATGTACATATCAGAGGGACAGAGTGAAGAGGTTAACACCCAACACGAGGTTTGGCAGCTTGAAATAAATTCCATGATTAAGATCCTCCATGATGCTCCAATCAAGTGCCACGACATCTTTAAAGCCTTACCTGGccaacagaaacacatcagaGTCGTTCTGACGTGCGGCGTCGCTGGCGTTGGAAAAACCTTCTTGGTGCAGAAGTTCTGTCTGGACTGGGCCGAGGGTTTGGAAAACCAAGATATCTGTCTGGTGATTCCTCTTGCATTTAGGGAGCTAAACTTGGTCAAGGATGAGCAGTACAGTCTTCTGGAGCTCCTCCATGTTTTCCATCCAGCATTACAGAAGGTCACAGCAGAGCAGCTCGCTGGCTCTAAAGTTCTCTTTATCTTTGACGGCCTGGATGAAAGCAGACTTTCAATGGATTTTCAGAACATGGAGGAGGTTGTGTCTGATGTCACACAGAAGTCATCGGTCAACGTGCTTTTGACAAACGTCATCCAGGGGAAGCTGCTTCCCTCGGCTCTTGTCTGGATAACTtcccgacctgcagcagccaatcagatccctcctgcgtGTGTTGACAGGGTAACAGAAGTACAAGGCTTCACTGACgaccagaaggaggagtacttcaggaagagagtcagtgatgaagagctgtccagcagaatcatctcccacatcaagacatccaGGAGCATCCACATCATGTGTctgatcccagtcttctgctggatcactgctacagttctggaccaCATGTTGATTACAGACCAGAAAGGAGAGCTGCCTAAGACCCTGACTGACATGTACTCACACTTCCTGCTGGTTcagacaaagaggaagaagcaGAAGTATGCTGAGGGACAAGAGACGAGTCCACAGGGGCTGACAGAGGCTGACAAGGGAGTTCTTCTGAAGCTGGGGAGGCTGGCGTTTGAACAGCTGGAGAAAGGAAACATCATGTTCTACCAAGAAGACCTGGAGCGCTGTGGTCTGGATGTCACAGAGGCCTCGCTGTACTCAGGAGTTTGTACAGAGATCTTTAAAACAGAGAGTGTGATCttcggggaaaaaaaagtctacaGCTTCATTCATCTGAGcattcaggagtttctggcggCAGTCTACATTTTCCACTGTTACACCAACAGAAAGGCACAGGTACTGGGCCCTTTCCTGGGGGAAAGAAAGACTAAATTATCCCCGAAACAGCATCATAACCGTGAACATGATGATCAAGATGATGATCTAGACTATGATCAGCCCCAAGATGATAGTGACAATAGTAACGACCAAGATGATAGTGACAATAGTAACGACCAACATGATTGGGACGATGATCCATACGATGATCGATACAATGATCACGATCAAGATGATCGTGAATATTATACATACACTGTCTCAACTCTGGATGACTTCCTGAAGAGAGCCACAGAAAAATCCCTGAAAAGTAAAAATGGCCACCTGGACCTGTTTGTTCGGTTCCTTCATGGCCTGACTCTTGAGTCCAACCAGAGACTCTTAGGAGGCCTGCTGGGTCAGTCGGACAACAGACTAGAAATCATCCAAACAGCCATCAACAACCTGAAGAAGATGAACATGGACAATGTAATCTCCCCTGACAGAAGCATGAACATCTTCCACTGTTTGTTGGAGATGAACGACCAAACAATACATCAGGAGATTCAAGAGTTCCTGAAGTCAGGGAGCAGATCACAGAAGGAACTCTCTGGGATCCACTGCTCAGCTTTGGCCTACATGCTGCAGATGTCAGGGGAGGTTCTGGATGAGTTGGACCTAAGGAAGTACAACACATCAGAGGAGGGACAACTGAGACTGATCCCAGCTGTGAGGAACTGCAGAAAAGCTGTACTTCATAACTGTGAGCTGTCAGACACTCACTTTGAAGTTGTGGCCTCTGCTCTTAAGTTCGATCCCTCCCATCTtaaagagctggacctgagcaaCAACCGTCTGCACGATTCAGGAATGAAGCTGCTGTCTGCTGGACTGGAAAATCCAAACTGTAGACTGGAAACTCTGGGATTGAGTGTCTGCAGgttgtcagagatcagctgtaattctctggtctcagctttgaagtccaacccctcccatctgagagcgctggacctgagctacagtcacaagctgcaggattcaggagtaaAGCTGCTGTGTGATTTCCTGGAGAGTCCAAACTGTGGACTGGAAACTCTGAGATTAAGTTGGTGCAGTTTGTCAGAGATGAACTGCgcttctctggcctcagctctgaagtccaacccctcccatctgagagagctggacctgagaggaaacaacctgcaggattcagacATGAAGCTGCTGTGTGAGCTGAAGGAGAATCCACTCTGTAGTTTGGAGACTTTGCTGTGGCAGTGACTGGACTGCTTTGCTGCTGCTCAGCGTCTCCACTTTCTCCTCCACCTGCGTTTTATTTGTTGTGTCTTTTATCCATACAGATAATCTGAACTGGGAGAGATTTTTTGTTCTATGACAACATAACTGTAGATCAGGCGTCTCCAACAAGTAGCTCTCGAGCTACCGGTAACTCGCGGATAGGTtcacaaactgagacacaaaaTGAACCAGATATTAAAAGTGAGGGCGCTAACTTTGTGGGCCATAGACGTGTAAAGTGGAATTTTTTCTTGGACCGTGATGTGAATATTTTCAGTGATGTGGCTATAACTATATGGGCTAAAAGAAGTGTAAAATAGACACGAACCTTGACGTGAAGTTAAGATTTTTTATAAGCTTTGGGTTTTGCAATTTCAGCAAACGGTAGCTTCGTTCAGcttatgtgtgttatgtaaatAAAGTAGCTCTTGGCCACTTTTGTTATTTAGAAGTAACCCTTATAAGAAGAAAGGTTGGAGACCCTTGCTGTagattaaaggtgccctgccatacaaaaccgtttttacttgcatttttttaaatatgttaggtccatatgtgtttgtgttatgttgtgaatgtgaaaatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636883.1 lncRNA upstream 24797 34333258 ~ 34335328 (+) True LOC120546564
TU256746 lncRNA upstream 77450 34282045 ~ 34282675 (+) False G189467
TU256850 lncRNA downstream 21284 34394786 ~ 34438684 (+) False G189535
TU256853 lncRNA downstream 21284 34394786 ~ 34438684 (+) False G189535
TU256855 lncRNA downstream 21284 34394786 ~ 34438684 (+) True G189535
TU256857 lncRNA downstream 21284 34394786 ~ 34438684 (+) False G189535
TU256858 lncRNA downstream 33936 34407438 ~ 34438684 (+) False G189535
XM_039781554.1 mRNA upstream 6008 34343568 ~ 34354117 (+) True LOC120546567
XM_039781379.1 mRNA upstream 27122 34318325 ~ 34333003 (+) True LOC120546450
XM_039781378.1 mRNA upstream 172570 34184189 ~ 34187555 (+) True LOC120546449
XM_039781552.1 mRNA upstream 186511 34110079 ~ 34173614 (+) True LOC120546562
XM_039781377.1 mRNA upstream 250012 34105395 ~ 34110113 (+) True LOC120546448
XM_039781380.1 mRNA downstream 4998 34378500 ~ 34453795 (+) True LOC120546451
XM_039781778.1 mRNA downstream 141320 34514822 ~ 34527646 (+) True LOC120546659
XM_039781382.1 mRNA downstream 157886 34531388 ~ 34540087 (+) True LOC120546454
XM_039781801.1 mRNA downstream 186430 34559932 ~ 34571848 (+) True LOC120546680
XM_039781383.1 mRNA downstream 210545 34584047 ~ 34595606 (+) True LOC120546456
TU256520 other upstream 373649 33965583 ~ 33986476 (+) True G189305
TU256522 other upstream 420738 33932064 ~ 33939387 (+) True G189307
TU256516 other upstream 499722 33859146 ~ 33860403 (+) False LOC120546766
TU256542 other upstream 588752 33765501 ~ 33771373 (+) False LOC120546444
XR_005637066.1 other upstream 596499 33763465 ~ 33763626 (+) True LOC120547364
TU256875 other downstream 89406 34462908 ~ 34464897 (+) True G189544
TU256872 other downstream 109362 34482864 ~ 34503755 (+) True G189541
TU256921 other downstream 112922 34486424 ~ 34487177 (+) True G189570
XR_005637062.1 other downstream 145786 34519288 ~ 34519426 (+) True LOC120547360
XR_005637063.1 other downstream 151386 34524888 ~ 34525026 (+) True LOC120547361

Expression Profile