RNA id: XM_039781738.1


Basic Information

Item Value
RNA id XM_039781738.1
length 3356
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC120546641
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 36232950 ~ 36257742 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAggactctgtgtctctgcagacGCTCCATTAAGACTCTTCTCCCTGATGGCAGAAGTTCATATTCAGGGCAGAGAGGCTGCAGTGAACAACAAAAGATGGCGAAATCGGACCTCTTTAGAACTTTAGACAATTTGGGAGCCAAAGACTTTAAACGCTTCAAGTGGCTCCTGCAGCAGAAGGGGGTCCTAGAAGACTTCCCAGCAATCCCAAAGAGTCGACTGGAGAATGCAGACCGGATGGACACAGTGACTCAGATGTTCCAGACCTACAGTATAAACACTTTTAAAGTGACCAGGATAGTTTTAGTTGAGATGAATCAGAAAAATCTAGTTCTAGATCTGGAGAAGTTATCAAAGACCACCACAGAACCTGCAGAGATTATTGCTGCATGCCAGCAAAAAGTAAAATCCAACTCACAAACAAAGTTCCGTTGGGCATTTGAGGAGATTGCCAAAGCAGAAAACAAaacccttctgaatcagatgtACACAGAGATCTACTTCACAAAGGGATGGACTGCAGAGGTCCatgatgaacatgaggtcagacagattgaaataGCATCCTGGAAACCAGACAgaacagaaacaacaatcagacatgaagacatctttaaaaccccacctggaagagatgaaccaatcagaacagtgctGACAAtgggagtggctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctgaaggcaaagccaaccaggacatccagttcacatttccattcactttcagagagctgaatgtgctgaaagaggaaaaatacagcttggtggaacttgttcatcacttctttagtgaaaccaaagaagcaggaatctacaggtttgaagagttcccggttgtcttcatctttgacggtctggatcagtgtcgacttcctctggacttccttAACACTAAAATCttgactgatgttacagagtccacctcagtgggtgtGCTCCTGACTAACCTTATCAGGGGGAATCTGCTTCtctctgctcgcctctggataactacacgacctgcagcagccaatcagatccctcctgagtgtgttgacatggtgacagaggtcagagggttcaccgatccacagaaggaggagtacttcaggaagagattcacagatgaggagcaggccagcAAAATCATCTCCCACATTAAGATATCGAGAAGCCTCCACGTCATGtgtcacatcccagtcttctgctgggtcactgctacagttctggaagacgtgttgaagaccagagagggaggagagctgcccaagaccctgactgagatgtacattcTCTTCTTGGTGGTTCAGACCAAACAGAAGAACGTCAAGTctgatggaggagctgagacagATTCACTCTGGAGTCCAGAGAGCGGTACAATGATCAAGTCTTTGGGgaaactggcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagaaCTGAGAGAGTGTGGCATTGATATCACAGTAGCCTCAGTGctcacacagatctttaaagaggaaaGTGGGCTGTACCAGGACAAGGGGTTCAGCTTTGTCCATCgtagtgttcaggagtttctggctgctcttcatgtccatttGACCTTCACCAACTCTGGAGTCAATCTGCTGTCAAAAGCAAAACCCGTGGATgaaacaactaaaaaaagatCTACACTGACATATCtctaccagagtgctgtggacaaggccttGAGGAGTtcaaatggacacctggacttgtttctctgcttcctcctgggtctttcactgcagaccaatcagacTCACCTACGAGGACTGttgacacagacagaaagtagCTCAGAGACCAATCAAGAAACAGTTgagtacatcaagaagaagatcagGAAGAGCTCCTCTGCAAAGAGAaacatcaatctgttccactgtctgaatgaactgagtGATTGTTCTCTAGTAGAGGAGATCCAACAGTACCTGAGCTCAGGAAGTCTCTCCAGAtataaactgtctcctgctcagtggtcagctctggtcttcatcttactgtcatcagaaaaagatctggatgtgtttgacctgaagaaatacggCGCTTCAGAAGAGGCTCTTCtcaggctgctgccagtggtcaaagcctccaacaaagctctACTGATTGGCTGTATGCTCTCAgtgagaagctgtgaagctctgtcttcatttctcagttcccagtcctctagtctgagagagctggacctgacttacaacaacctgcaggactcAGGGGTGAATATGCTCTCTGCTGGACTTCAGAGTCCACACTGTACACTGAGAACCCTCAGGCTAAGAAAGTGTAGGCTGTCAGAGaaaagctgtgaagctctgtcttcagttctcagctctgagtcctctagtctgagagagctggacctgagttaCAACAGCctgaaggattcaggagtgaagaagCTCTCTGCTGGACTTCAGAGTCCACACTGTAAAATGGAAACCCTCAGGCTGGAAAAGTGTaagctgtcagagagaagctgtgaagctctgacctcagttctcagctctgggtcctctagtctgagagagctggacctgagttacaacaacctgcaggattcaggagtgaagctgctttCTGCTGGACTTCAGAGTCCACACTGTAAATTGGAAACCCACAGgctgagtgaatgtaagctctcagagagaagctgtgaagctctgtcttcAGTTCTCAGTTCTGAGTcatctagtctgagagagctggacctcagttacaacaacctgaaggattcaggagtgaagctgctttCTGCTGGACTTCAGAGTCCACAATGTACACTAGAAACTCTCAGTTTGGTAGGCTGTGAGATCACAGAGGAAGGCTGTACTTATCTGGCTTCAGCTCTGaactccaacccctcccatctgagagagctggacctgagcctCAATTATGTAGGAGACTCAGCAGTGAAGCTTCTGTCTGCTGCAGTGGAGAATCCACTCTGGAGACTAGAAACTCTCAGGTTCGAACATATATTGGAGCAGGGGTTAAGATATCTTCTGTTATGTTGAAGTATCCTTGTGAACTCacagtggacacaaacacagtgaccAGAAACCTTAAACTGTCTGAAAACAACAGGAAGGGGACACATATGGAGGAGAAGCAGCCATATCTTTATAATCCAGAGATGTTTGACTGCAggcagctgctgtgtagagatggtctgactggtcgctgttactgggaggttgagGGGAGTGGAGAGGTTTATATAGCAGTGAGTTACAGAAGAATAAGCAGGAGGGGAAACAGTGAAGACTgtttgtttggatataatgatcagtcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257403 lncRNA upstream 34735 36193496 ~ 36198215 (+) True G189859
TU257436 lncRNA upstream 41102 36187896 ~ 36191848 (+) False G189881
TU257437 lncRNA upstream 41102 36187896 ~ 36191848 (+) False G189881
TU257434 lncRNA upstream 41102 36191226 ~ 36191848 (+) False G189881
TU257435 lncRNA upstream 41102 36191226 ~ 36191848 (+) False G189881
TU257477 lncRNA downstream 20385 36278127 ~ 36278512 (+) True G189909
TU257446 lncRNA downstream 66406 36324148 ~ 36382580 (+) True G189885
TU257493 lncRNA downstream 94607 36352349 ~ 36359955 (+) True G189923
TU257462 lncRNA downstream 116952 36374694 ~ 36375834 (+) False G189897
TU257507 lncRNA downstream 186587 36444329 ~ 36445635 (+) False LOC120546466
XM_039781768.1 mRNA upstream 315425 35912496 ~ 35917525 (+) False zbtb25
XM_039781769.1 mRNA upstream 315425 35912536 ~ 35917525 (+) True zbtb25
XM_039781390.1 mRNA upstream 355009 35860792 ~ 35877941 (+) True LOC120546463
XM_039781750.1 mRNA upstream 376919 35843762 ~ 35856031 (+) True LOC120546647
XM_039781751.1 mRNA upstream 376919 35843762 ~ 35856031 (+) False LOC120546647
XM_039781731.1 mRNA downstream 11546 36269288 ~ 36313267 (+) True LOC120546639
XM_039781730.1 mRNA downstream 11546 36269288 ~ 36313267 (+) False LOC120546639
XM_039781735.1 mRNA downstream 11546 36269288 ~ 36313267 (+) False LOC120546639
XM_039781733.1 mRNA downstream 11546 36269288 ~ 36313267 (+) False LOC120546639
XM_039781732.1 mRNA downstream 30408 36288150 ~ 36313267 (+) False LOC120546639
TU257460 other upstream 18351 36213881 ~ 36214599 (+) True G189895
TU257395 other upstream 213351 35981818 ~ 36019599 (+) True G189858
TU257398 other upstream 213351 35981818 ~ 36019599 (+) False G189858
TU257342 other upstream 316472 35912520 ~ 35916478 (+) False zbtb25
TU257294 other upstream 702607 35526848 ~ 35530343 (+) False LOC120546462
TU257465 other downstream 116558 36374300 ~ 36375834 (+) True G189897
TU257496 other downstream 125166 36382908 ~ 36398240 (+) False LOC120546466
TU257528 other downstream 278937 36536679 ~ 36541312 (+) True G189944
TU257569 other downstream 394461 36652203 ~ 36653482 (+) False xrcc3
TU257530 other downstream 664690 36922432 ~ 36949307 (+) False LOC120546470

Expression Profile