RNA id: XM_039781755.1


Basic Information

Item Value
RNA id XM_039781755.1
length 2256
RNA type mRNA
GC content 0.43
exon number 13
gene id LOC120546649
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34856836 ~ 34895534 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTATCGGAATGGAGGCGAGGGACTCCGCCCAGCGGAAGAGAAATAGTCTGAGGGAAAGGATAGATctgaaaaggaagaaaagagcAGCTTCGTCTCTGCCAGGGTTTCCTCGACACATGAAGGAGGAAAGAGTCTGTAAATAAACCCGAAGTGAGTCCAGCAGTGAACTATGGAACAGTTTATTGAAGACTCCAGCCTCGAGGGCTGGAAGAGGATTGGCTCTGGAGGTTTCGGACACATCTACAAAGCCAGGCATCGTCAGTGGGCCTATGACGTGGCCATTAAACTGCTTCGTCCTGACGACGGgagcaatGAGTCTTTGCTGCGTGAGATTGAAATGATGCGTCAAGCCACCAGCCCGTATGTCATGGCTGTCCGAGGGGTCTTCAAGGGTCTACCGCCAAACGCCACGTCTGACTTGTCAACACAGCTTGGTGTGGTCATGGACCTCATGAAGAGAGGATCACTGGCCTCCCTACAGGAAGCCTTGGATGGACCTCCACCCTGGCCGCTGGTCTTCAGACTGGCTCACCAAGTGGCTCTGGGTATAAACTTCCTCCACAGTCTGACCCATCCCATTCTCCACAAGGACCTGAAGCCCCAAAACGTGCTGCTAGACGACTCTCTCAATGCCAAGCTGACAGATTTTGGCCTTTCCCGGATTTCCTACAGCGTTGCACAGGTTTCCAGGAAGGACGATGGATGGGGGACGACCAACTACATGCCCCCGGAGGCATTTGTCTTATCCTACAAACCTAAACGAGCCTCTGATATCTACAGtTATGGGATACTCCTTTGGTCCATTCTCACAGGGAAACAACCATATAAGGATGCAAAAGCCGCCATAGTGGAGGTTCAAGTCCCAAAAGGACAGCGTCCACCAATAGATGATATTAAGGGTGATGCTGCAGGGTTGACAGAGTTGAAAGAACTGATGAAGAGATGTTGGGACGAAATACCTGAAGAAAGGCCCCAAGCCCTTGAGTGTACAACCAAGGCAGAAAAACTATATCAGATGCACGAACATGCAATTTTTGACGCTGTCTATGAAGTGCTGAAGAAACTGGAGCAAAAGGAAAAGGAAGACAAGGGAATAAATGAGCTGTTTCAAAGAACTCAAATTGCTAAGGCTTCAGAGAGTGACCGTTTTGAAGAAGAGGATGTTGTTGATAACATTCGGAAAGGTCCCCCGCCAATTCAGGAgcaaaaggaagaggaagacaagGGAATGAAAGAGCAGTTTCAAAGAACTCAAATTGTTCAGGATTCAGAGAGTGACCGTTTAGAAGACGTGGACGTTGTTGGTAACATTCGGAAAGGTAACCCGCAAATTCAGgaagaaaaaaaggtgACACCTCAAGAGGTCCTCTTGGGGACTCTAGAACATTTGGGAGCTGAAGAATTTGAAACATTCAAGTGGTACCTGGAGCAAAAGAGGGTCCTAGCACCCTTTCCAGCAATCCCAAAGAGTCGACTAGAGAATGCAAACAGGGTGAAGGTGGTGGATCAGATGTTCCAAACATACAGCATGAACACAATTGAAGTGACCAGAATAGTTTTAGAGAAGATGGATCAGAACAAACTAGTGGAGAAAATCTTAAAATACAAGACACAAAGTATTTCACTTTAATAAAAAGCAAGAAtgagctaaataaataaatactattaaataaatactcttgtccaaaaaggagtaggaacaAGCAAAATGCTTTTTGGGTCCTACCCTTTTTGAAATGTCCATACCATTATCAAAGGGTTTTTTAtctattgtttttcaataaacaGCCATATAACCCTACAACCAAAAACATTGTGTTGTGTTTCGAGCACAAATTGTGGTCTAGTATCACTTCCAAAAAACAAATTTTCATAAACTCTTTCTAACATATTATTGTAAAACATCACAAATTCTAATGTATTTCCCTTTTCCCAAACAccatacatttagtttttttcagatttattGATAATTAGTTTGAGTCAAACCACAATTTCAGCTTCCCTAATTCTTTTGAGACAACGTACAGCCGCTGCTGTAGGTTCTCCCCAGAACAAAAAATATTGGTGTCATCAGCAAAAACAATCCATTTCACAATACTAGATACTTTACTATACTATATCACTGATGTATAAAATGACTAATTTAGGACCAAATATTAACCCTTGTGGCACACCACATGTAATATCTAAATATGTTGAGTTGTAATCCCCCATTTGTACaaattgttttctgttttcaatAAAACTTTTTAA

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257137 lncRNA upstream 20432 34830676 ~ 34836404 (+) True G189711
TU257139 lncRNA upstream 25221 34830676 ~ 34831615 (+) False G189711
TU257138 lncRNA upstream 25221 34831124 ~ 34831615 (+) False G189711
TU256970 lncRNA upstream 119882 34708726 ~ 34736954 (+) True G189601
TU257156 lncRNA downstream 39983 34935517 ~ 35084911 (+) False G189720
TU257175 lncRNA downstream 54570 34950104 ~ 34950650 (+) True G189735
TU257176 lncRNA downstream 54570 34950104 ~ 34950321 (+) False G189735
TU257153 lncRNA downstream 63718 34959252 ~ 35014287 (+) False G189720
TU257172 lncRNA downstream 70797 34966331 ~ 34984803 (+) True G189732
XM_039781771.1 mRNA upstream 11744 34837198 ~ 34845092 (+) True LOC120546655
XM_039781384.1 mRNA upstream 29345 34803603 ~ 34827491 (+) True LOC120546458
XM_039781766.1 mRNA upstream 60433 34780341 ~ 34796403 (+) True LOC120546653
XM_039781767.1 mRNA upstream 61221 34780338 ~ 34795615 (+) False LOC120546653
XM_039781765.1 mRNA upstream 225901 34627478 ~ 34630935 (+) True LOC120546652
XM_039781715.1 mRNA downstream 10457 34905991 ~ 34927163 (+) True LOC120546635
XM_039781773.1 mRNA downstream 32884 34928418 ~ 34941331 (+) False allc
XM_039781772.1 mRNA downstream 32885 34928419 ~ 34941331 (+) True allc
XM_039781791.1 mRNA downstream 292382 35187916 ~ 35193265 (+) True gje1
XM_039781788.1 mRNA downstream 308672 35204206 ~ 35345930 (+) True vta1
TU257129 other upstream 31666 34824042 ~ 34825170 (+) False LOC120546458
TU256938 other upstream 157592 34663015 ~ 34699244 (+) True G189582
TU256888 other upstream 249498 34592437 ~ 34607338 (+) True G189555
TU256898 other upstream 249498 34592437 ~ 34607338 (+) False G189555
XR_005637065.1 other upstream 286742 34569956 ~ 34570094 (+) True LOC120547363
TU257179 other downstream 113966 35009500 ~ 35010825 (+) True G189738
TU257158 other downstream 118861 35014395 ~ 35017163 (+) True G189721
TU257203 other downstream 249976 35145510 ~ 35147428 (+) True LOC120546683
TU257162 other downstream 262689 35158223 ~ 35166388 (+) True G189723
TU257244 other downstream 354207 35249741 ~ 35250635 (+) False G189769

Expression Profile