RNA id: XM_039781762.1



Basic Information


Item Value
RNA id XM_039781762.1
length 1566
RNA type mRNA
GC content 0.61
exon number 7
gene id LOC120546651
representative False

Chromosome Information


Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 36666081 ~ 36681833 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ACACGggactcttattttgaaaagcggTGACCGGAAGTGATGCTGAGGGCGATCGTGAGCGAGCTGGATGTTGATGCGCAGCTCGTGAAGCTTCAGATCAGAAAAACGTCTCAAAAATATCAGAAGATCAACAGAACTAAAGAGGGTGCTGTGACCATGCCTCCCTGTGCTGCTCTCTCATTGGTCGGCCTGCTCCTGCTAACTGTGGCCTCCTCCGAGCCCGCTGACCCCTCCCTGGACGATCTGACCAATAGGAACGCAGACTTCGGCGCGAGGCTGTACCGAGCCGTCAGCAGCCGGACCGACGACAACGTCTTCCTGTCGACCTTCACGCTGTCGGCGGCGCTGCTGGCGCTGCTCGGCGCCGCCAACGGGCCGACCCGGGACCAGCTGCTGCAGGGACTCAGTCTCACCGGACTGGACCCGCAGACACTACCAGACCTGTTCCAGACTCTGAGTGCCGGCGTGCAGCAGGGCAGCGCCGCCATGACCCTGAAGCAAGGCGTGGCCGTGTTTCCGGCTCAAGGCGTCCAGGTGTCCCCGTCCTACCTGGACCTGTTGCAGACCAAGTTCGGCGGCAGCTTGAAGAGCTTGGCGTACGCAACGCCGCCGGAGGCCGCGGACGCCATCAACGTTTGGGCTCAGGAGGTGACCGGAGACGAGGTCCAGGACCTGGTGCCAGACCCAGACCCCCAGACCCAGCTGCTGCTCGCCACGGCGGCCGCATACAACGTGCGGTTCAGTCCGTCCTTTAACGAGTCCCTGACTCAGGACGAGCGTTTCTACGTGGGAAAGTATCACGTGGTCATGGTTCCCATGATGTTCCGGTCCGATAAGTACTTCCTGGCGTACGACCGCTCGCTGAAGGCCGGCGTGCTGAAGCTGCCGATGGCGGGCGGGGCGGCCATGTTGGTGGTGCTGCCGGACGAAGATGTGGACGTCACGGCGGTGGAAGAGGAAGTGACCGGAGAGAAGATCCAGGCCTGGATCAGACAGCTCAAGAAGACGAAGCTGGAGGTGCAGCTTCCTCGCTTCCTGTTGGAGCGGTCGTACTCTCTGCGGGACGTCCTGCAGACTCTCGACATCACACAGGTGTTCCAGGACGACGCTGACATCAGCAACATGGGCGGAGCCGAGGGACTCAAACTCACACAGGTGAGAGTCGAGGGACTCAAACTCACACAGGTGAGAGCCCAAGGACTCAAACTCACAGGTGAGAGCCCAGGGACTCAAACTCACACAGGTGAGAGCCCAAGGACTCAAACTCACACAGGTGAGAGCCCAAGGACTCAAACTCACACAGGTGAGAGCCCAGGGACTCAAACTCACACAGGTGAGAGCCGAGGGACTAAGACTCACACAGGTGAGAGCCGAGGGACTCAAACTCACACAGGTTCATCACAAGTCTCGCGTGtcagtggctgagaacgatgacatCACAGCGGGAGGCGGAGCCAGTGTGTTCTCCAGCCTCCCCCCCCGCCTGACGGTCAACAGACCCTTCCTCTTCATCGTGTACGAGACGGCGAGCCGCGCCCTGCTCGCCATGGGCCGCGTCATCGACCC

Function


GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU257570 lncRNA upstream 1699 36661940 ~ 36664382 (+) True xrcc3
TU257582 lncRNA upstream 2771 36662951 ~ 36663310 (+) True G189973
TU257458 lncRNA upstream 3460 36544183 ~ 36662621 (+) True G189893
TU257572 lncRNA upstream 11165 36654140 ~ 36654916 (+) True G189963
TU257573 lncRNA upstream 38438 36603968 ~ 36627643 (+) True G189964
TU257608 lncRNA downstream 20907 36700485 ~ 36751626 (+) False G189981
TU257601 lncRNA downstream 27303 36706881 ~ 36775559 (+) True G189978
TU257616 lncRNA downstream 34717 36714295 ~ 36724052 (+) True G189985
TU257618 lncRNA downstream 35805 36715383 ~ 36715998 (+) True G189986
TU257607 lncRNA downstream 68454 36748032 ~ 36751626 (+) True G189981
XM_039781394.1 mRNA upstream 2292 36652178 ~ 36663789 (+) False xrcc3
XM_039781393.1 mRNA upstream 220800 36382917 ~ 36445281 (+) True LOC120546466
XM_039781786.1 mRNA upstream 333028 36330145 ~ 36333053 (+) True LOC120546666
XM_039781735.1 mRNA upstream 352814 36269288 ~ 36313267 (+) False LOC120546639
XM_039781745.1 mRNA downstream 45772 36725350 ~ 36746137 (+) True LOC120546644
XM_039781739.1 mRNA downstream 78306 36757884 ~ 36774048 (+) False LOC120546642
XM_039781740.1 mRNA downstream 78306 36757884 ~ 36774048 (+) False LOC120546642
XM_039781741.1 mRNA downstream 78961 36758539 ~ 36774048 (+) True LOC120546642
XM_039781795.1 mRNA downstream 111041 36790619 ~ 36793487 (+) True tmem251
TU257569 other upstream 12599 36652203 ~ 36653482 (+) False xrcc3
TU257528 other upstream 124769 36536679 ~ 36541312 (+) True G189944
TU257496 other upstream 267841 36382908 ~ 36398240 (+) False LOC120546466
TU257465 other upstream 290247 36374300 ~ 36375834 (+) True G189897
TU257460 other upstream 451482 36213881 ~ 36214599 (+) True G189895
TU257530 other downstream 242854 36922432 ~ 36949307 (+) False LOC120546470

Expression Profile