RNA id: XM_039781763.1


Basic Information

Item Value
RNA id XM_039781763.1
length 3574
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC120546651
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 36666081 ~ 36681833 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tattttgaaaagcggTGACCGGAAGTGATGCTGAGGGCGATCGTGAGCGAGCTGGATGTTGATGCGCAGCTCGTGAAGCTTCAGATCAGAAAAACGTCTCAAAAATATCAGAAGATCAACAGAACTAAAGCAGAGGGTGCTGTGACCATGCCTCCCTGTGCTGCTCTCTCATTGGTCGGCCTGCTCCTGCTAACTGTGGCCTCCTCCGAGCCCGCTGACCCCTCCCTGGACGATCTGACCAATAGGAACGCAGACTTCGGCGCGAGGCTGTACCGAGCCGTCAGCAGCCGGACCGACGACAACGTCTTCCTGTCGACCTTCACGCTGTCGGCGGCGCTGCTGGCGCTGCTCGGCGCCGCCAACGGGCCGACCCGGGACCAGCTGCTGCAGGGACTCAGTCTCACCGGACTGGACCCGCAGACACTACCAGACCTGTTCCAGACTCTGAGTGCCGGCGTGCAGCAGGGCAGCGCCGCCATGACCCTGAAGCAAGGCGTGGCCGTGTTTCCGGCTCAAGGCGTCCAGGTGTCCCCGTCCTACCTGGACCTGTTGCAGACCAAGTTCGGCGGCAGCTTGAAGAGCTTGGCGTACGCAACGCCGCCGGAGGCCGCGGACGCCATCAACGTTTGGGCTCAGGAGGTGACCGGAGACGAGGTCCAGGACCTGGTGCCAGACCCAGACCCCCAGACCCAGCTGCTGCTCGCCACGGCGGCCGCATACAACGTGCGGTTCAGTCCGTCCTTTAACGAGTCCCTGACTCAGGACGAGCGTTTCTACGTGGGAAAGTATCACGTGGTCATGGTTCCCATGATGTTCCGGTCCGATAAGTACTTCCTGGCGTACGACCGCTCGCTGAAGGCCGGCGTGCTGAAGCTGCCGATGGCGGGCGGGGCGGCCATGTTGGTGGTGCTGCCGGACGAAGATGTGGACGTCACGGCGGTGGAAGAGGAAGTGACCGGAGAGAAGATCCAGGCCTGGATCAGACAGCTCAAGAAGACGAAGCTGGAGGTGCAGCTTCCTCGCTTCCTGTTGGAGCGGTCGTACTCTCTGCGGGACGTCCTGCAGACTCTCGACATCACACAGGTGTTCCAGGACGACGCTGACATCAGCAACATGGGCGGAGCCGAGGGACTCAAACTCACACAGGTTCATCACAAGTCTCGCGTGtcagtggctgagaacgatgacatCACAGCGGGAGGCGGAGCCAGTGTGTTCTCCAGCCTCCCCCCCCGCCTGACGGTCAACAGACCCTTCCTCTTCATCGTGTACGAGACGGCGAGCCGCGCCCTGCTCGCCATGGGCCGCGTCATCGACCCCTCCAGCAAATAACGACTAATGGTTCCCAACCCGAGGCTCCAGACCCCCCCAGCGGGACGGGAGAGGAACCAAATGGGTCCCGAGACAGTTTCAGATATCTCATCGCAAACTAATCGCATGATTGGCTGTCGTTAACTCGCGGTTAatggtagggctgggcaatatatggatattatatcgatatcgtgatatgagactagatatcgtcttagattttggatatcataatatcgtaACATGGCTTAAGTGTCTTCTCCTGGttctaaaggctgcattacagtaaagtttatGTACTTTTCTGACCTTACCAGCCTGTTGTCTTCTATTATTtgtacctttacccacttagtcattatgtccacattactgaagattatttatctaaaatctcattgtgaagatattttgttaaagcaccgaTTGTAAACCTTAGAATATCACCACGATATCGACATCGAGGTGTTAGGACAGAaatatatcgtgatatctgatatCTGATCACGTTGATGGTTCCGTTCAGCGCTGTTCACATGTTAAATTAATGATGAATGATTTTTAGCATTTTAAGAAGAAAGTtcataaaatgttgaaaaaagagacaaaaaagtcGGAAAGATTTCTGAAAAAGATTGAAATACGTGgtaaaaaaacccaaaaagcacagaaaaagaTGACAAAGTGACAAAGAACATCGGGAGAAGTTACAATAATGCTGGTCTCatggttttaatttaaaattttgacccagagtCTGAGTATTTCAGAGTATTTCAGAGTATTTCAGAGTATTTCAGACTATTTCTGAGTATTTCTGACTATTTCTGAGTATTTCTGACTATTTCTGAGTATTTCTGAGTATCATGTAGTTAGTTTTAAagctcacattgattttacgTTTATTCGGCTTATGTGCTGCCAATAAGTATTAGAATGGGAAGCTGAATGTATGCTTTGTTTGTCAGCGTTGGCTGTGAGGTTTCCGACAGACAAAGCAGCGTTTGTACGGCACCCTGGAAAAGCACCGATTtggtattttctgtattttcaactttTACATCCGTTATATTTAACTGCAGAGTAACATCggacaatctgcttcctgtttacaccgccacgcacatgcccagtgtgtgtgtgaaaggtcATGTGATCTGTGTTATCAGACTTAATATGGACGGAGACCTGGAAAGCCCAAAGTGCCACGAAACGACTACATTTTAacgcaaattacatttaaaaacaccGCATTTTACACAGTTTTATTCGTCAAAAAACACGGCTATTCTCTGTGCTTTTGTCAGTTGCTGTaaaaagttttagttttttccccagAAACCTCACAGCAAACGTTCAGACGAGCGCCGTTTCTACGacctttttcaacgtaaaagaCGCCGTTTTGTGAAAACTCACAATACCAGCGTTTTTAACAGTGTTAAAAgcagtgtttttaaatgtaaatcatGTTTAAAATGTAGCCGTTTGATGGCACTTTGGGCTCTCCATACTGAGATTAGTTCGCTGCTGAAAACTCTTGTGTGCACAGAGATGGTTTCTGTCTCAAAACACCGCTTAAAAATTAAAACGTAGCCGTGTAAATGTCTCTGAGTCGGACAGAGTCACAGATGTAACTGTGGTTCTCTGAGTCTGAGACAGAGTCACTAATGTAACTGTGGTTCTCTGAGTCTGACACAGAGTCACTGATGTAACTGGTTCTCTGAGTTTGAGACAGAGTCACTAATGTAACTGTGGTTCTCTGAGTCGGACACAGAGTCACTGATATAACGGGTTCTCTGAGTCTGACACAGAGTCACTAATGTAACTGTGGTTCTCTGAGTCGGACACAGAGTCACTGATATAACGGGTTCTCTGAGTCTGAGTCACTGATGTAACTGGTTCTCTGAGTCACTGATATAACGGGTTCTCTGAGTCTGAGACAGAGTCACTAATGTAACTGTGGTTCTCTGAGTCTGAGTCACTGATGTAACTGGTTCTCTGAGTCACTGATTTAACTGTGGTTCTCTGAGTCTGAGACAGAGTCACTGATATAACTGTGGTTCTCTGAGTCTGAGACAGAGTCACTGATATAACTGTGGTTCTCTGAGTCTGAGACAGTTATTAACTAATTATTGGCTCATTAGTAAACGTAAGCATCATTAGCTATTGTAGCATGTGTGCTGTATATAAAAAACACTTCCTGTActaatatttaaacataaccatGTGTGTAAaacattaaacaatacaatgtgAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257570 lncRNA upstream 1711 36661940 ~ 36664382 (+) True xrcc3
TU257582 lncRNA upstream 2783 36662951 ~ 36663310 (+) True G189973
TU257572 lncRNA upstream 11177 36654140 ~ 36654916 (+) True G189963
TU257573 lncRNA upstream 38450 36603968 ~ 36627643 (+) True G189964
TU257541 lncRNA upstream 84072 36581450 ~ 36582021 (+) False G189951
TU257608 lncRNA downstream 18652 36700485 ~ 36751626 (+) False G189981
TU257601 lncRNA downstream 25048 36706881 ~ 36775559 (+) True G189978
TU257616 lncRNA downstream 32462 36714295 ~ 36724052 (+) True G189985
TU257618 lncRNA downstream 33550 36715383 ~ 36715998 (+) True G189986
TU257607 lncRNA downstream 66199 36748032 ~ 36751626 (+) True G189981
XM_039781394.1 mRNA upstream 2304 36652178 ~ 36663789 (+) False xrcc3
XM_039781393.1 mRNA upstream 220812 36382917 ~ 36445281 (+) True LOC120546466
XM_039781786.1 mRNA upstream 333040 36330145 ~ 36333053 (+) True LOC120546666
XM_039781733.1 mRNA upstream 352826 36269288 ~ 36313267 (+) False LOC120546639
XM_039781745.1 mRNA downstream 43517 36725350 ~ 36746137 (+) True LOC120546644
XM_039781739.1 mRNA downstream 76051 36757884 ~ 36774048 (+) False LOC120546642
XM_039781740.1 mRNA downstream 76051 36757884 ~ 36774048 (+) False LOC120546642
XM_039781741.1 mRNA downstream 76706 36758539 ~ 36774048 (+) True LOC120546642
XM_039781795.1 mRNA downstream 108786 36790619 ~ 36793487 (+) True tmem251
TU257569 other upstream 12611 36652203 ~ 36653482 (+) False xrcc3
TU257528 other upstream 124781 36536679 ~ 36541312 (+) True G189944
TU257496 other upstream 267853 36382908 ~ 36398240 (+) False LOC120546466
TU257465 other upstream 290259 36374300 ~ 36375834 (+) True G189897
TU257460 other upstream 451494 36213881 ~ 36214599 (+) True G189895
TU257530 other downstream 240599 36922432 ~ 36949307 (+) False LOC120546470

Expression Profile