RNA id: XM_039781778.1


Basic Information

Item Value
RNA id XM_039781778.1
length 1552
RNA type mRNA
GC content 0.53
exon number 11
gene id LOC120546659
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34514822 ~ 34527646 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCATGTCAGCTTCGCCGAGGGGAAAGTCAATTTAATAAAATCTGATTTTAGAGGGATCTTTAAAAGCTAAAAACGTTCGTTTTAGAGCCTGAAACTTGAACACATAAACGCTGCAACACGGATATAAAAATGCTTTCTGCTCGCGCCCCTCTCTCCGTGAAGAATGAAAACTCAGTCAGCAGTAAGATGGACACCATGTCtctgaacaaagaaaacacGCCACCGAGCCTGAACACGACCCGCATCTTGGCGTCTAAAACCGCGCGAAAAATCTTCGACGACGCTACGCCCAAAGCCGTGAAGAAGAGCagcgaggaagaggaggagccgCTGCTGAAGGAGAACCCTCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCAGAggagGTGGATCTGTCGAAGGACGGGCAGCACTGGGACTCTCTGAAGGACGAGGAGCGCTACTTCATCTCTCACGTGTTGGCGTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTGGTGGAGCGCTTCACGCAGGAAGTCCAGGTGACCGAGGCCAGGTGTTTCTATGGTTTCCAGATCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTGCTCATCAACACCTACATCAAGAAGCCAGCAGAGAGAGAATACCTGTTCAACGCCATCGAGACTCTGCCCTGTGTGAAGAAGAAGGCCGACTGGGCCATCAACTGGATCGGCAACCAGAACGCCGGATTtggAGAGCGCGTGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGGGTCTCCACTGTGACTTTGCGTGTCTGATGTTCAAACATCTGGTGAACAAACCGTCGGCAGAAACAGTCACAGAGATCATCAGGAACGCTGTGGAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCCGGTGAAGCTGATCGGGATGAACTGTGAGCTGATGAAGCAGTACATCGAGTTCGTGGCCGACAGACTGATGCTGGAGCTCGGCTTCACCAAGatcTACCGCGTGGAGAACCCCTTTGACTTCATGGAGAACATCTCTCTGGAGGGCAAGACCAACTTCTTCGAGAAGCGAGTGGGCGAGTACCAGCGGATGGGCGTGATGTCGGGCTCCACCGACAACACCTTCAGGCTGGACGCCGACTTCTGAGACCCAGGTGGCGCCATCGCACACTCAGCCACACGTTCACATGGCGGGACAATGACCACGCCGTTATGCGCTTAAAACACAAACTCTAAACCGGGACTAGAAAGTTCTCAgagtctcttctctctctctctctctctcaaagtgGAATCACTCCGAACTACATGTACAAAAAGGTCTCTTATCTCAGGTGTTTAAATTACTATTttatagggatgcaccgaatccagatttttggggttttcggctgaatcctgaaccccctg

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0009186 deoxyribonucleoside diphosphate metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256885 lncRNA upstream 11279 34419216 ~ 34503543 (+) False G189553
TU256886 lncRNA upstream 11279 34433979 ~ 34503543 (+) True G189553
TU256923 lncRNA upstream 20335 34493696 ~ 34494487 (+) True G189572
TU256861 lncRNA upstream 57152 34409656 ~ 34457670 (+) True G189537
TU256910 lncRNA upstream 57530 34456627 ~ 34457292 (+) True G189560
TU256879 lncRNA downstream 15021 34542667 ~ 34562894 (+) True G189548
TU256927 lncRNA downstream 16839 34544485 ~ 34546167 (+) True G189575
TU256928 lncRNA downstream 29152 34556798 ~ 34557154 (+) True G189576
TU256933 lncRNA downstream 49671 34577317 ~ 34582503 (+) True G189579
TU256934 lncRNA downstream 58377 34586023 ~ 34676086 (+) True G189580
XM_039781380.1 mRNA upstream 61027 34378500 ~ 34453795 (+) True LOC120546451
XM_039781723.1 mRNA upstream 141320 34360125 ~ 34373502 (+) False LOC120546638
XM_039781382.1 mRNA downstream 3742 34531388 ~ 34540087 (+) True LOC120546454
XM_039781801.1 mRNA downstream 32286 34559932 ~ 34571848 (+) True LOC120546680
XM_039781383.1 mRNA downstream 56401 34584047 ~ 34595606 (+) True LOC120546456
XM_039781793.1 mRNA downstream 94410 34622056 ~ 34624173 (+) True LOC120546672
XM_039781765.1 mRNA downstream 99832 34627478 ~ 34630935 (+) True LOC120546652
TU256872 other upstream 11067 34482864 ~ 34503755 (+) True G189541
TU256921 other upstream 27645 34486424 ~ 34487177 (+) True G189570
TU256875 other upstream 49925 34462908 ~ 34464897 (+) True G189544
TU256520 other upstream 528346 33965583 ~ 33986476 (+) True G189305
TU256522 other upstream 575435 33932064 ~ 33939387 (+) True G189307
TU256925 other downstream 3871 34531517 ~ 34538625 (+) False LOC120546454
TU256926 other downstream 3871 34531517 ~ 34585439 (+) False LOC120546454
TU256876 other downstream 21723 34549369 ~ 34552365 (+) True G189545
TU256929 other downstream 37139 34564785 ~ 34610483 (+) True G189577
XR_005637064.1 other downstream 37823 34565469 ~ 34565607 (+) True LOC120547362

Expression Profile