RNA id: XM_039781801.1


Basic Information

Item Value
RNA id XM_039781801.1
length 1833
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC120546680
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34559932 ~ 34571848 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCGTTCTAGCGCCAAGATTTCAATAAAAAGGGCGAGTGGACAACAGAAACCGCTTCAGTCTCTGCTCTTCTCCTGTGTTTGCTCTGCTCCCTAGTTTAGATTTCTTCTCTTTGTTTTACGCCAACTTTTAATTTAAGTTAACttatctttttatttgtctGTCCGTGTGAACTCCAGGATATAAAAAATGCTTTCTGCTCGCGCCCCTCTCTCCGTGAAGAATGAAAACTCAGTCAGCAGTAAGATGGACACCATGTCtctgaacaaagaaaacacGCCACCGAGCCTGAACACGACCCGCATCTTGGCGTCTAAAACCGCGCGAAAAATCTTCGACGACGCTACGcCCAAAGCCGTGAAGAAGAGCagcgaggaagaggaggagccgCTGCTGAAGGAGAACCCTCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCAGaggaggtggatCTGTCGAAGGACGGGCAGCACTGGGACTCTCTGAAGGACGAGGAGCGCTACTTCATCTCTCACGTGTTGGCGTTCTTCGCCGCCAGCGACGGCATCGCCAACGGAAACCAGGTGGAGCGCTTCACGCAGGAAGTCCAGGTGACCGAGGCCAGGTGTTTCTATGGTTTCCAGATCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTGCTCATCAACACCTACATCAAGAAGCCAGCAGAGAGAGAATACCTGTTCAACGCCATCGAGACTCTGCCCTGTGTGAAGAAGAAGGCCGACTGGGCCATCAACTGGATCGGCAACCAGAACaggatgACAGGAGAGCGCGTTGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGGGTCTCCACTGTGACTTTGCGTGTCTGATGTTCAAACATCTGGTGAACAAACCGTCAGCAGAAACAGTCACAGAGATCATCAGGAACGCTGTGGAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCCGGTGAAGCTGATCGGGATGAACTGTGAGCTGATGAAGCAGTACATCGAGTTCGTGGCCGACAGACTGATGCTGGAGCTCGGCTTCACCAAGatcTACCGCGTGGAGAACCCCTTTGACTTCATGGAGAACATCTCTCTGGAGGGGAAGACCAACTTCTTCGAGAAGCGAGTGGGCGAGTACCAGCGCATGGGCGTGATGTCGGGCTCCACCGACAACACCTTCAGGCTGGACGCCGACTTCTGAGACCCAGGTGGCGCCATCGCACACTCAGCCACACCTTCTCCCTCTCATTCAACCAATTGGTGTTAACCCTGGCCTATACATCacacccagtgcatgctgggtagTCTTATCCAACCCCAGTGTATACATACCGCtcacccagtgcatgctgggtagTGTTAGTCAACCTGGGTAGTGTTAGTCAAGCCTAGTGTAAACATACCTCTCACTCAGTGCATGCTGGGTAGTCTTATCCAACCCCAGGGAGTCTGTCCCTCtcacccagtgcatgctgggtagTGTTAGTCAGCCCTGGTGTATATGTCCCtcacccagtgcatgctgggaaagtCTTCAACCCAGATGCATCTAGCAGATGAACCCAGACTCTTGTACAGAGCGGAGGTCCATCAGGATGAAATGAGACTTTTTAACCAGATGGAGCCGGTTGTGTTTTGTAAATTTATAGTTTTATCTTCATTttgtaataaaatgtaaatttatttta

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0009186 deoxyribonucleoside diphosphate metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256928 lncRNA upstream 2778 34556798 ~ 34557154 (+) True G189576
TU256927 lncRNA upstream 13765 34544485 ~ 34546167 (+) True G189575
TU256881 lncRNA upstream 42076 34461669 ~ 34517856 (+) True G189550
TU256886 lncRNA upstream 56389 34433979 ~ 34503543 (+) True G189553
TU256933 lncRNA downstream 5469 34577317 ~ 34582503 (+) True G189579
TU256934 lncRNA downstream 14175 34586023 ~ 34676086 (+) True G189580
TU256937 lncRNA downstream 15075 34586923 ~ 34681853 (+) False G189581
TU256893 lncRNA downstream 15230 34587078 ~ 34606143 (+) False G189555
TU256891 lncRNA downstream 15546 34587394 ~ 34606143 (+) False G189555
XM_039781382.1 mRNA upstream 19845 34531388 ~ 34540087 (+) True LOC120546454
XM_039781778.1 mRNA upstream 32286 34514822 ~ 34527646 (+) True LOC120546659
XM_039781380.1 mRNA upstream 106137 34378500 ~ 34453795 (+) True LOC120546451
XM_039781720.1 mRNA upstream 186430 34360126 ~ 34373502 (+) True LOC120546638
XM_039781383.1 mRNA downstream 12199 34584047 ~ 34595606 (+) True LOC120546456
XM_039781793.1 mRNA downstream 50208 34622056 ~ 34624173 (+) True LOC120546672
XM_039781765.1 mRNA downstream 55630 34627478 ~ 34630935 (+) True LOC120546652
XM_039781767.1 mRNA downstream 208490 34780338 ~ 34795615 (+) False LOC120546653
XM_039781766.1 mRNA downstream 208493 34780341 ~ 34796403 (+) True LOC120546653
TU256876 other upstream 7567 34549369 ~ 34552365 (+) True G189545
TU256925 other upstream 21307 34531517 ~ 34538625 (+) False LOC120546454
XR_005637063.1 other upstream 34906 34524888 ~ 34525026 (+) True LOC120547361
XR_005637062.1 other upstream 40506 34519288 ~ 34519426 (+) True LOC120547360
TU256872 other upstream 56177 34482864 ~ 34503755 (+) True G189541
TU256888 other downstream 20589 34592437 ~ 34607338 (+) True G189555
TU256898 other downstream 20589 34592437 ~ 34607338 (+) False G189555
TU256938 other downstream 91167 34663015 ~ 34699244 (+) True G189582
TU257129 other downstream 252194 34824042 ~ 34825170 (+) False LOC120546458
TU257179 other downstream 437652 35009500 ~ 35010825 (+) True G189738

Expression Profile