RNA id: XM_039781804.1


Basic Information

Item Value
RNA id XM_039781804.1
length 1989
RNA type mRNA
GC content 0.46
exon number 20
gene id rars2
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24419260 ~ 24436323 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGGACGTTGCGTGGCTACGGCGGAAGTACAGTAGAATGGATCATACAGCATTTGATTGTCGCTAATTTTGCAAAAAGTTTATTATTACATTGTGTTTGCACGTTCGCGAAACATGGCTTGTTTCTTCCGAAGTAGAATTGCAGAAAAGCTGGGTCGGACTCTGCAGCAGTCTGAGGATGCCTTCATACCAGCTCTGTCAGCAGTTCCAGTTTTTAAGAAACAGCAGACTGCTGACTTCAAACTGTCAATCAGCACATTACGGATCAGTGGGATTTTACCATCCAGTGGTGACATTCAGCTGCAGACAGAAGACCTGGCCACTCGGttGAAGCAGGACAGTGTGGTGGAGGACATATCTGCTGGATGTGGAGTGATCAACTTTAAAGTGAATCGCAAGCTTCTTGTCCAGAAAATGTTGGAGCCATTTGGAAAAGAGGAGGATGTGAAATTTGGGTTAACTAGTGAACTTTTCAATACTCTCAAGAGAGGAACAACACTAGTTGAATATAGCTCTCCAAATATTGCCAAAAAATTCCACGCTGGACACTTAAGATCGACAATTATTGGTAACTTCATTGCTAACTTAAAGCAGTCCCTTGGAAACAATGTCATTCGCATGAATTACCTCGGTGACTGGGGTATGCAGTTTGGTTTGTTGGGAGCTGGGTTTGGTCAGTTTGGATGTCAGGACAAACTGAAACAGAATCCCTTACAGCATTTGTTTGAGGTTTATGTTCAAGTGAACAAGGAAGCAGAGCACAATGAGGATATTAAGCAGGCTGCCAGAGACTTCTTTAGACAGCTGGAGCAGCATGAGAGCGAGGCTGTGTCGTTATGGCAACAGTTCAGAGAGATCACAGTGGACGAGTATCAACACATTTACAAGCGGTTAGGGGTCCACTTTGATATTTACTCCGGAGAGTCTTTTCACCAAGATCAAGCCCAGGAGGTGGTGCAGCAGCTGCAGAGCCAAGGCCTGTTGAAAACCTCTGAGAAAGGAACCGGTGTAGTGGATCTCTCCCCTGCTGGAGACATGAGCAGCGTCTGCACTGTGCTCCGCAGTGACGGCACAACTCTCTACATCACCAGAGATGTTGCTGCAGCGATTGACCGAAAAGCAAAGTACCATTTTGATGAGATGATTTATGTGACAGATAAAAGTCAGGCAAATCACTTCCACCAGTTGTTCCACATCCTGCTTGCTATGGGACATTCTTGGGCTGACAGGTGTAAGCATGTACCTTTCGGCCTGGTGCGGGGCATGAAGACCCGGAGCGGCGAGGTGGTGTTTCTGGAGGACGTGCTGGACGAAGCTCGGGCCAGGATGCTCCACAACATGAGCCAGTCAAAAACAACAAAGGAAATGGACAACGCAGAGGACACAGCAGAGAAAGTTGGAATCAGTGCCCTGATAGTGCAGGACTTCAAAGGTCCCCTGCTGTCGGACTATACGTTTGACTGGGACAGGATGCTGCAGGCTCAGGGAGACACAGGAGTTTTCCTCCAGTACACACATGCTCGACTCCGCAGTTTAATAAGGAGAAATGAAGGCGCCAAGGCAGCTATATTTGATCCATCCCTTCTATTTGACCAGACGAGCATCACCATCCTGCAGCACCTCCTTCGCTATGATGAGGTATTGTACCAGTCGGCCCAGGATCTGCAGCCCAAACACCTAGTCAACTTTTTATTGAAGCTGTGCCACCTGATTGCTTCAGCACATAGAGAGCTGCCAGTCAAAGGAAGCAAGCAGGATGTTGCACAGGCAAGGTTACAACTGTTCAGTGGAGCCTGCTCAGTCCTGGCCAACGGGATGAGGATCCTCGGAATCACACCAGTtgataaaatgtaaaactaatttatcgggtttttttttgttttgtttttataactgCTGTAGGTACCATACTGCTTTAGTTAAgttgtactgtaaataaaaagcaTTGCATTTTCAGAATAAATTCATCAGAAGCATTTGCTTTTCCTA

Function

GO: NA

KEGG:

id description
K01887 RARS, argS; arginyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253454 lncRNA upstream 32092 24386956 ~ 24387168 (+) True G187074
TU253387 lncRNA upstream 184509 24211413 ~ 24234751 (+) True G187027
TU253347 lncRNA upstream 231396 24185289 ~ 24187864 (+) False extl3
TU253322 lncRNA upstream 272042 24072763 ~ 24147218 (+) True G186972
TU253548 lncRNA downstream 200402 24636725 ~ 24639484 (+) True G187158
TU253556 lncRNA downstream 219647 24655970 ~ 24656643 (+) True G187165
XR_005636936.1 lncRNA downstream 573190 25009513 ~ 25012350 (+) True LOC120546772
TU253634 lncRNA downstream 573207 25009530 ~ 25012241 (+) False LOC120546772
TU253656 lncRNA downstream 674723 25111046 ~ 25115288 (+) True G187212
XM_039782704.1 mRNA upstream 1460 24413847 ~ 24417800 (+) True akirin2
XM_039782880.1 mRNA upstream 6930 24408071 ~ 24412330 (+) True cnr1
XM_039782881.1 mRNA upstream 6930 24408071 ~ 24412330 (+) False cnr1
XM_039781349.1 mRNA upstream 43116 24279420 ~ 24376144 (+) True rngtt
XM_039781860.1 mRNA upstream 140771 24259548 ~ 24278489 (+) True LOC120546721
XM_039781350.1 mRNA downstream 10585 24446908 ~ 24485599 (+) True LOC120546425
XM_039782057.1 mRNA downstream 62423 24498746 ~ 24506389 (+) True LOC120546832
XM_039782343.1 mRNA downstream 79121 24515444 ~ 24518183 (+) True grcc10
XM_039782287.1 mRNA downstream 94008 24530331 ~ 24630590 (+) False LOC120546974
XM_039782288.1 mRNA downstream 94008 24530331 ~ 24630590 (+) False LOC120546974
TU253325 other upstream 336156 24079603 ~ 24083104 (+) True G186975
XR_005636956.1 other upstream 829571 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 830746 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 2353671 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 2472260 21944743 ~ 21947000 (+) True erh
TU253479 other downstream 70590 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 567696 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 783545 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 1591737 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 1840372 26276695 ~ 26281368 (+) False gareml

Expression Profile