RNA id: XM_039781821.1


Basic Information

Item Value
RNA id XM_039781821.1
length 4397
RNA type mRNA
GC content 0.41
exon number 11
gene id mtmr9
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17888641 ~ 17904513 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTTTATGTGAACGTACCAGTCTCGCCCAACAACAAATAAAACGGAAAGATAATCAGTTTGTTGTCTTTTCTTCAGGTCAGGTCATGGAGTTTGCAGAGTTGATAAAGACACCCAGGGTGGATGGAGTTGTCCTACATCGGCCTTTCATGCCCACTGTGGAGGGGACCCTGTGTTTGACTGGTCATCACCTGATTCTCTCCTCCAGACAGGATAACACAGAGGAACTGTGGCTGCTTCATTCAAACATTGACTCAATAGAGAAAAGATTTGTGGGATCTCTGGGAAGCATCATAGTCAAATGCAAAGACCTGAGGGTGATCCAGCTCGACATCCCTGGCATGGAGGAGTGTCTCAACATTGCCAGCTCTATTgagGCTCTGTCCACGCTTGATTTACTCTCCCTGATGTACCCTTTCTTTTACCGGCCCATGTTTGAAGTCATAGAAGATGGCTGGAATTCATTTCTTCCAGAGGATGCATTTAAAGATTTGGAGTCCATGACAGATGAGTGGAGACTGAGTGAAGTCAACAAGGACTTCAGTGTGTGTCCATCATACCCCCCTCTAGTGGCAGTGCCCAAATATGTTGATGATGACACGCTGAGGAAAGCCGCTACTTTCCGTCACGGTGGCCGTTTTCCAGTACTTAGCTACTACCACAAGAAGAATGGCATGGTGATGATGCGAGCAGGGCAGCCTCTGACAGGCACCAACGGGCGCCGGTGTAAGGAAGACGAGAAGCTGATCAATGCCACCCTGCGACCAGGCAAACGTGGCTACATCATCGACACACGCACCATCAATGTTGCCCAGCAGGCCAAAGCTCGAGGAGGAGGATTTGAGTCTGAAGCTAACTACCCCCAGTGGAGGAGGATCCACAAGGCAATCGAAAGGTCAAACATCCTCCAGGAGAGCTTGATAAAGCTGGTAGAGGCGTGTAACGACCAGTCGCACAGTATGGACCGCTGGTTAAGCAAGCTAGAGGCTTCCAACTGGCAGACTCATGTCAAAGAGATCCTCACCACTGCCTGCCTGGCTGCCCAGTGTATCGACAGgGAGGGAGCGTCGGTGCTTGTTCACGGTACAGAAGGGACAGACTCCACCCTGCAGGTGACCTCGTTGGCTCAGATCATCCTTGATCCGGCCTGCAGGACCATCAGAGGCTTCCAGGGCCTGGTGGAGCGAGAGTGGCTCCAGGCGGGTCACCCGTTCCAGCAGCGCTGCGCCCAGTCAGCCTACTCCAACAGCAAGCCTCGTCAAGAGGCTCCTTCCTTCCTGCTCTTCTTGGACTGTGTGTGGCAGATCCTTCGCCAGTTTCCATGCTCCTTTGAATTCAGCGAGGGCTTCCTGGTGCTGGTCTTTGAACACGCCTATGCTTCTCAGTTTGGTACATTTTTGGGCAACAGTACAGCTGAGAGAACCAAACTATCTCTACCTGAGAAGACTGTGTCCCTTTGGTCATGGGTTAATCGGCCCCAAGAACTGGAACGTCTGACCAACCCGCTCTACGAGGCTAACAGTCTTGTGATCTGGCCCTCCGTTGCCCCTCAGAGTCTGCTGCTGTGGGAAGGAGTGTTCCTTCGTTGGAACCGCTCCTCCAAGTGTTTGGACGAGGCCTATGAGGAAATGGTACATATAATTGCTTACAACAAGGAGCTTCAGAACAAAGTAAACAGCCTGCGCAGGCAGCTGGCCCAGCTGGAAACTGAAGATCCTCTGCTGCAGAcgccatagagagagagagagatgagaaagGAAGCGAGATGGAAGAAAGAGgtagaaaatgtgaaaaaatacataactaaatacaaaaacagATCAATGTCAACCCAGTTTTAGGCTTCGGTTAGGTTTAAATTCCTTTCAGATGTTTGAGAATATATGATTCTAACAATTATAATTTGGGATTTTGTACCTGATTGATGATGACACATTTTTGAAGATAAAAATTGAAATAGAACGGCCCTAAGCGCAGAACAACTTTAAAATCAGCCTCTTTTCGATCTTCCATTCACGCAGTTGTCTTTCACACAGTTTACATGACCGAATGGACTAAACCAGTGATAGCAATGCCATGTTGTGTCATTGAAACTAAGCAGGAGTGAGTGGGAAAGACAGCTACTTATTTCTCAGAGTGCTGCTAAAAGCCCAACACTTACTCAACACAACATCTCCTAGTTCTCCAGTATAGATCGTCcaaaaaaataattgacagTGATGTACATAAttcaattaatcaatcatttaggtaatttttcaagcaaacaTGCCTCTGTCTCTCATGTGAGAATTTGCTACTTTTCTTTATGATAAATCACTGTAGATTTaatatctttgtgttttggGACTGTTGGCCAGACAAAACGACCAATTTGAAAATGTCCTCTTGAGCTGTTGGACATTAGGATGGACATTTTTTCACAATTCTTTGACATTTCATAAACTGAACGAATAAAAATAGTCGTTACATTAAATGATCAttcaaataattgttaattgcaTCCTTATTGTAGTATtagtgtgcacgtgtgtgcagAAAGAAAACTGTTCAGTTCCTCAAATTACACTTTGGCATTCTTCAACTGATTTCACAGCTGCGAAGCCTCATCAAACCCCCACGTCTCACACTCGCTGACTCTCATTTACATACGCAGATATCTAACCATGCAGTGAGAGAGTCCATTTTCATGTGTTTTCATAGATTCCTATGTATTTTTGGGCATTGATCTTGTTCACTAGGGAATATTGGATGTTCATTTACTACAGGGTACACGTTTTCACCAATCATCCTGCTGAATGTATATATACCACTGAAGCACTGCAGAGTAACTATGGCAACATATAGGCTACTATAAGGCAGCATGTGACTTTGCTGCACGACGAGATGATATAATAAGCGTAGGTAGGGTCAGcacctactgtactgtactgtacaatgAGAGGGGAGGCTTGTCTAATGGGGATCTGACCAAAATATCTTGTATGTTTATTACTTGACATTCCAGTAAGGAGGTATTAAGAAAGACTTATTTAACAAAACTTTACAAAATGTTAGCTTGCCTCGTTATGTTTGGTCagtatttctttttcaaactCACTATGAATAATCAAATATGTTTGAGTGTATGATGCAGAAAAAATAAGGTCTTGTTGCTACAGTAATGTTCGCCATGTAATTATTAGACTTTACAGAGTTGATGGAGGTTTGAAAATAGAATGTTAATTTAAAGACCAATATATATTTTGGTTATTAAACTTGTATAATAACTGTTGTTCAAGTACATTATGAAACAAAAAGCATATCTGCTGTTGTAGTTTAAGATCCAAAACTAATGCACTGTGTGAAAGGCATATACAATATCAGAAACATATAATTATAATTCCTATAATTAGCTTAATGTTGTTGTCAGTACTCACCAGCTGTCTTCATATTAGACAATAAATGTCTTTATATTAAATGTGAAAACATGCCAATTTATCAACAAACGTAAAGCTATTAGACTTAATGCTGTGCAGGTGACAcagatgtttttgtcatgtGGACATTCACTTTAGTATCAATGTCTTGCATCCAAAGTGATCATTTTCTCACCAATGCAGGACTCATGTAGTAAGTCCATTACCAGGAAGGTCACAAAAACCATTACACACCTGTAATTTCACTTCATGTCGTTAAGGAAGCAGCTAAATGTGTTTAATACAACATGACCTAAATTCAGTTGGCATAGTGACATTGAAGCTCATCTTTCAATCCTATTCATGGGCAAAGGTAGCTCCCATTATCATAATATTGTAAAGAAAGCTTAATGCTGCActttaaatacaaaaagaaatggTAGTTGTGGGGTTAAATTAAATCCGTTGTGGTCATCCATAgccagttttgtttgttttgccaGTAGGAAATatcattttctctgcttgtgtcCATGTCGTCTTCATACATTGAATCTATTTTACTTCAAGAATGATGTAATAATCACACTAAACTCAACTGATTCCAGCCACTACATTAAACTGCTTTATAAAGGGAAAGTTGTTTATAGCTGCACTATATACACGTTTTCCTTTGCAAGAAATAGAGACACCTTACCAAGCGTTgctttgtgtgtgcatgaatgGAACAATCCATTCAATCAAGGTAATGGCGTGATTTACAATTGTGCAAATGTCCTATACTTGCATTATGAATAATGTTATCCTTAAAATGACCGTTGCTTTGTCAAAGTCAACAAAACTCTACTGTGTTGTGCAATGCCTTGCTGCAAAATCTGAATTCAAAATAATCATTGTACTTTTATCCCTGCTGATCAGATGTttgtaaaattattattattgttcataatatgaaatgttttttttaagttttcaagCCATTAAAATGTATAGCACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250777 lncRNA upstream 123853 17763969 ~ 17764792 (+) True G185156
TU250773 lncRNA upstream 124909 17760676 ~ 17763736 (+) False G185155
TU250930 lncRNA downstream 152898 18057411 ~ 18059367 (+) True G185254
TU250934 lncRNA downstream 198512 18103025 ~ 18104904 (+) True G185258
TU250935 lncRNA downstream 198512 18103025 ~ 18104517 (+) False G185258
TU250941 lncRNA downstream 234380 18138893 ~ 18140219 (+) False znf513a
TU250952 lncRNA downstream 251457 18155970 ~ 18158108 (+) False LOC120546825
XM_039781499.1 mRNA upstream 79953 17800090 ~ 17808692 (+) True fam167ab
XM_039782784.1 mRNA upstream 88697 17791853 ~ 17799948 (+) False lca5
XM_039781825.1 mRNA downstream 2228 17906741 ~ 17913030 (+) True tdh
XM_039781826.1 mRNA downstream 3174 17907687 ~ 17913030 (+) False tdh
XM_039782197.1 mRNA downstream 15065 17919578 ~ 17949445 (+) False pinx1
XM_039782198.1 mRNA downstream 15206 17919719 ~ 17949445 (+) False pinx1
XM_039782196.1 mRNA downstream 15539 17920052 ~ 17949445 (+) True pinx1
TU250755 other upstream 202247 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 215759 17669172 ~ 17672886 (+) False G185145
TU250558 other upstream 522668 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 522668 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 592944 17293654 ~ 17295701 (+) True G184996
TU250889 other downstream 12340 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 116450 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 116450 18020963 ~ 18052071 (+) False fndc4a
unassigned_transcript_1081 other downstream 1027803 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 1299641 19204154 ~ 19208096 (+) False LOC120546624

Expression Profile