RNA id: XM_039781838.1


Basic Information

Item Value
RNA id XM_039781838.1
length 669
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC120546716
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 11619704 ~ 11634330 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGTTTTAGTGTGGCGGAGGGATACACAGGCAATCCCCATTCTGGCCACGGCCAATATACACACTCCTAACCCGCCAGTGGAACTCCATCTAAGGAACGACCACACTCCTAGTCTGCCTCCACAGACCAACAAGCACACAACCTATCCGACATGGCTGACCAACTAACAGAGGAGCAGATTGCAGaGTTCAAGGAGGCTTTCTCCTTATTTGACAAGGACGGTGACGGCACCATCACCACCAAAGAGCTCGGCACCGTCATGAGGTCGCTGGGCCAGAACCCCACAGAGGCCGAGCTCCAGGACATGATCAACGAGGTGGATGCTGACGGTAATGGAACCATTGACTTCCCAGAGTTCCTGACCATGATGGCCAGAAAAATGAAGGACACAGACAGCGAGGAGGAGATCCGTGAGGCTTTCCGGGTATTCGACAAGGACGGAAATGGCTACATCAGCGCTGCAGAGCTCCGTCACGTCATGACGAACTTGGGAGAGAAGCTAACGGACGAGGAGGTGGACGAGATGATCAGAGAAGCAGACATTGACGGAGACGGACAGGTCAACTACGAAGAGTTTGTACAGATGATGACTGCAAAGTGAGGCTTGCCCGCCCCGTCCTGTCCCCtcttagaagaaaaaaaaaaggaaaaaaaacaaacaaacaaat

Function

GO:

id name namespace
GO:0022400 regulation of rhodopsin mediated signaling pathway biological_process
GO:0001975 response to amphetamine biological_process
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0045087 innate immune response biological_process
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion biological_process
GO:0051412 response to corticosterone biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0005513 detection of calcium ion biological_process
GO:0002027 regulation of heart rate biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0030168 platelet activation biological_process
GO:0002576 platelet degranulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:1901841 regulation of high voltage-gated calcium channel activity biological_process
GO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction biological_process
GO:0043647 inositol phosphate metabolic process biological_process
GO:0043388 positive regulation of DNA binding biological_process
GO:1901339 regulation of store-operated calcium channel activity biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0051000 positive regulation of nitric-oxide synthase activity biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0051343 positive regulation of cyclic-nucleotide phosphodiesterase activity biological_process
GO:0032516 positive regulation of phosphoprotein phosphatase activity biological_process
GO:0016310 phosphorylation biological_process
GO:0046209 nitric oxide metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0060315 negative regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0060316 positive regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0034704 calcium channel complex cellular_component
GO:0030426 growth cone cellular_component
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030017 sarcomere cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043274 phospholipase binding molecular_function
GO:0017022 myosin binding molecular_function
GO:0031800 type 3 metabotropic glutamate receptor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0008179 adenylate cyclase binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0050998 nitric-oxide synthase binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function
GO:0072542 protein phosphatase activator activity molecular_function
GO:0031432 titin binding molecular_function
GO:0044325 ion channel binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0031996 thioesterase binding molecular_function
GO:0031997 N-terminal myristoylation domain binding molecular_function

KEGG:

id description
K02183 CALM; calmodulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248796 lncRNA downstream 29144 11586036 ~ 11590560 (-) True G183720
TU248740 lncRNA downstream 75639 11540514 ~ 11544065 (-) True G183685
TU248735 lncRNA downstream 82253 11536271 ~ 11537451 (-) True G183682
TU248718 lncRNA downstream 119051 11500081 ~ 11500653 (-) True G183665
TU248701 lncRNA downstream 172385 11446975 ~ 11447319 (-) True G183656
TU248808 lncRNA upstream 24108 11658438 ~ 11658962 (-) True G183732
TU248810 lncRNA upstream 24724 11659054 ~ 11659573 (-) True G183734
TU248823 lncRNA upstream 64722 11699052 ~ 11699965 (-) True G183747
TU248829 lncRNA upstream 112801 11747131 ~ 11747593 (-) True G183753
TU248866 lncRNA upstream 153671 11788001 ~ 11788321 (-) True G183781
XM_039781328.1 mRNA downstream 43647 11575473 ~ 11576057 (-) True LOC120546403
XM_039782719.1 mRNA downstream 71354 11546186 ~ 11548350 (-) True LOC120547228
XM_039781001.1 mRNA downstream 891179 10724470 ~ 10728525 (-) True glrx5
XM_039780998.1 mRNA downstream 910867 10693839 ~ 10708837 (-) True pla2g7
XM_039780999.1 mRNA downstream 910869 10693839 ~ 10708835 (-) False pla2g7
XM_039782501.1 mRNA upstream 4516 11638846 ~ 11650060 (-) True LOC120547092
XM_039781106.1 mRNA upstream 25664 11659994 ~ 11673089 (-) True kcnk13b
XM_039782028.1 mRNA upstream 259204 11893534 ~ 11918141 (-) True tshr
XM_039781091.1 mRNA upstream 393218 12027548 ~ 12358231 (-) False nrxn3b
XM_039781084.1 mRNA upstream 393218 12027548 ~ 12358230 (-) False nrxn3b
TU248695 other downstream 245089 11374108 ~ 11374615 (-) True G183650
XR_005636937.1 other downstream 1009079 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other downstream 1098294 10520717 ~ 10521410 (-) True G183528
TU248390 other downstream 1518643 10099603 ~ 10101061 (-) False LOC120546281
TU248116 other downstream 2486232 9129573 ~ 9133472 (-) True G183176
unassigned_transcript_1080 other upstream 948839 12583169 ~ 12583241 (-) True trnat-ugu_2
TU249125 other upstream 1326168 12960498 ~ 13007868 (-) True LOC120547209
TU249198 other upstream 1559747 13194077 ~ 13215824 (-) False hmgn3
TU249194 other upstream 1571977 13206307 ~ 13215824 (-) False hmgn3
TU249195 other upstream 1571977 13206307 ~ 13215824 (-) False hmgn3

Expression Profile