RNA id: XM_039781872.1


Basic Information

Item Value
RNA id XM_039781872.1
length 4334
RNA type mRNA
GC content 0.47
exon number 20
gene id lpin1b
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16837534 ~ 16856613 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGCTGTCCACTTGCACACGGCAGTCAGACTCTTGACATGCTCACGGAGCGAAGACTTAAGTTGTAGACTGGATCGGACTTGTGGAGtttcatacatacatatctGTTTAGAGGTAGCTAAGACCTGAGACCTGCAGCTGGGATCAAACACATTATGGAATCATGACATCAGCGGAGGACGATGAAGAGTTTGATGAGGCCGTTGAGCGCTATGCCAGTGACACCACCTGGAGCTGGACCCTTCAGACCATGAACTACGTGGGCCAGTTGGCGGGCCAGGTGTTTGTCCAGGTCAAAGAGCTGTACCGAGGCCTCAATCCCGCCACCCTTTCTGGCTGCATTGACGTCATCGTAGTGAGACAGCCCGATGGATCCCTGCAGTGCTCACCTTTCCATGTTCGCTTCGGCAAAATGGGAGTCCTCCGCTCCCGAGAGAAAGTGGTGGACATGGAGATCAATGGAGAACCAGTGAATCTCCATATGAAGCTTGGGGACAACGGGGAAGCATTCTTTGTGCAAGAAACAGAAAATGACGAGGAAGTGGTTCCGTCCTACCTGGCCACCTCTCCGATCTTGTCAGATGGAGCCATTCTGATGAGCTCCTCCCTGATGGGGAAATGCTCCGGGCCAACCATACAAACCCTGGGCTCCTCGGGGAGCATGGGAGAGACCGGAAGTGTAGTGacgaagaagaggaggaagaggaggaagaagactcGGGCGGACAGcttgaggagagaggagagtggGGACTACTCCGAGGATGAAGACATGTTCACCATAGACATCAGCTCAGATGAAATGACGACGATGCAGAGCAACAGGACTTCATCTCAGGACGTTTTAAGAGATGAGACAACAGACGGCTCTTTCTACACTCGTTCAGATGGAGAGTGGAGCCCTATTCAGAGCCCTGGAAACTCTCGTCCCACCTCTTCTAAGAGCGACTCTGAACTAATGAGCAAGCCGTCAAACAATCAGAATCCAACCATGCACTGGGCGTGGGGAGAGCTGCCACAGGCTGCCACGCCATCCTTCCTTCCAGTGAAATCCAACCCTCAACCAGTGTGCCCAGTATCCATCCCTTTTTCTGAAAGCACACACTTCCGTGTGATAACTCACGAGGCGTCTTCGGAACAGTGCGGACCCTGCTCAGAAATATCAGCGCTCAGACTGCTGATGCCAGAGGAGACCAGTGAGGAGACAGTTGAGATGGAGTCCGAATCCATGAGGATGGAGACCCAGACAGCCGGAGGTGCGGCAACTTGTATGATGTCTGACACGGAGGAGACAATGTGTCGTCCACCAGGAAAGACAGACTCTCCATCCAAGAGAAAAGACAAGAGAAGCCGCCATCTTGGTGCTGATGGAATTTAcctggatgacatcacagagcTCGAGCCTGAAGTGGCGGCCCTTTATTTCCCTAAGAGTGACGGTGGTGCAGCAGTGAGGAGCATCTCGGACCCGGGCCTCCACAGCAGCAGTCTGTCCCCACAGTCACTCAGCTCTGGAGGGGACAGCGGAGTGGACAGCTACTGCGACCCCTTGGCTGACATGCCGTCTATCGCCATTTCCTTGTGTGGAGGACTCAATGACAACAAGGAGATCACTAAAGAGCAGTTCCATGAGAAGATCATCTCTTACCAGCAGTTTTCGGAAAACCCCTCCATCATCGACGACCCCAACTTAGTTGTGAAAATTGGCTCCAAATACTATAATTGGAGCTCTGCGGCTCCACTTATGCTGGCTATGCAGGCCTTTCAGAAACCGCTGCCAAAGGCTACAGTGGAGAACATCATGAAGGAGAAGATGCCCAAGAAAGGAGGGAGGTGGTGGTTCTCCTGGCGAGGCAGAAACAGCAGCACCAAATCGGATTCCGTCTCTGAGCGTGGGGCCTGTGGCTATGATGAGCAGGCTGGGAAAATGTCAAGCAGACGCAAAGAAGAGTCGTCCTCTAGTGATGAAGACCACAGGGCAGCCAAACAGAGCTCTGCCACCATCCAATCAGAGCCTGGGCTCACACCGGGAGGCGTGACTTATAAGAAAACACTTCGGCTCACATCAGAGCAGCTGctgtCTCTCCAGCTGCAGGATGGTCCTAACGATGTTGTGTTCAGCGTGACCACTCAGTACCAGGGAACCTGTCGCTGTCAGGGCACCATCTACCTCTGGAACTGGGACGACAAGATAATTATCTCTGACATAGATGGAACCATCACCAGGTCGGACACACTGGGTCATATCCTGCCCACACTGGGGAAAGACTGGACCCACCAGGGCATAGCACACCTCTACCACAAAGTCAGCCAAAATGGCTACAAGTTCCTGTACTGCTCAGCTCGAGCTATCGGCATGGCTGACATGACCAGAGGTTACCTACACTGGGTCAACGAAAGAGGCACCATGCTTCCTATAGGCCCCGTCCTTCTCAGCCCGAGCAGCCTCTTTTCAGCTCTGCACagGGAAGTGATCGAGAAGAAACCAGAGAAATTCAAGGTGGAGTGTCTCAACGATATCAAGAACCTCTTCTAccccaacacacagccattcTATGCAGCATTTGGCAACAGACCAACgGATGTATATTCCTATAAAGAAGTAGGAGTGCCTCTAAACAGGATTTTTACAGTAAACCCTAAAGGAGAGCTAGTGCAGGAGCATGCCAAGACCAACATCTCATCTTACGTCCGTTTGGGTGAGGTGGTGGACCATGTGTTTCCTCTGAAGATGCGGGCCTCCTCCTCAGACTTCCCCTGCTCAGACACCTACAGCCACTTCACCTACTGGAGGCAGCAGCTCCCCCGGGTGGAGCATCAGGGCACTACACCTCCACAGTCTCCCCGTCCCAGCAGCTGACTACCCGTGGCCTGCTGAGCGGCTCCTAGCAGGCAGAGCACTGATGGGTGTGATATGAATCTGTAGATGTTTGTAGAacatgtagcactttgagatcacagagagagcgagagagagagagctgctgtGAATACTCTTATAACGCACAAGAGGGATGTAAGCGCACTTTCATGAAAAGACGGCCTCTGTAGCCTTCTGACTAGATGTATGTATTTGAgcaattataataatttattcaGGCAGCTTAGCACATGTATTATTTTTGACATTATTTAGGTAGCTAAAGGTAGCTTTCTAGGCAGACAGTTGCATTCTGCATCTAACAGATGATATGGCTTCTGTTCAGAAGtgcatcacacagacacactgtgcACACATAAGAGAGCAAGTTACTTAAACGTGTGCCAAATACTCAACGTAGAATTTATTTTCGTATTTCGTTTTTTCAGTCCAGACTGTTACAGATCCTGAATCAGCATGGAAATGCAGATATAtacctatatacagtacatacatgcaGACTAATTTGACTTTATAGCAACACGTGTGTGTAATCTAATAttctgtttgaaaaaaaaaacagtattagttacatattacattaaaatgtattacaGAGCACAATGATTGAATGATCATCTATCTATATAGCTTGACATTATCCTGACAGAGGGTGCATTATAAAGACGGTTTGGAATGAATATTTATTGTTGAGACAAAATAATGCTGATagagaacagaaagaaaaacattttcagtgGTCAAAATCAAGAGTATCTGTGAGAGGAACTgctaaatcatttttatttttctattgacATCCACACTGTCTATATGTTGTGATCATTTCTGTTGTGGCCTTCATGAAACGCCTTTTAATTTATCCAGTTCATAAAATAAGTCTATGTGACGTGTTCCACTCTCTAAGATGTATGCTTGTTTCCATAAATGCCATAgagtatattttatttattcatctgaTGACATACTGACTGATATAAAATGTAGCTTACATATACATTAGCCATTGGTTCTTTTACTGTACTTCCATGCCCTAGTAATGTCACTTAAAGCAAAGCCCTCATTGGACTATCCATAGCTTAGAGCAGACAGTAGGCcacagtacacacagacactcgtGAAGTGATCTTTATTTCTTACAATACCACAGATAACCTGaggtcatatacagtatatgtacagGAGCTGCTATCACAGTGACTGTGACCATAACTATATGAACAGTATCATCATATCGAGTAAGCCTGCAGTTTATAAAAGAGGATGTGTGCATATAATGCTTTTTATTCTTTCCATGAAAGAGCTACTAAACATAGCCTGAAAGCGTATTATCTTTGCCTTAACTGTGAACAATATGATCAAGGATTTGTTCATTTATTCCCTCCACCCCTTCTCTTGACCAgttcactgttacatttatGTAATCaaacttattaaaaaaatatgccTTGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250341 lncRNA upstream 111142 16724877 ~ 16726392 (+) True G184851
TU250330 lncRNA upstream 151455 16681895 ~ 16686079 (+) True vegfab
TU250247 lncRNA upstream 227154 16595940 ~ 16610380 (+) True G184796
XR_005636882.1 lncRNA upstream 321201 16501866 ~ 16516333 (+) False LOC120546561
TU250222 lncRNA upstream 335647 16495957 ~ 16501887 (+) False LOC120546561
TU250480 lncRNA downstream 77083 16933696 ~ 16956864 (+) True G184948
TU250541 lncRNA downstream 424502 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA downstream 432238 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA downstream 432238 17288851 ~ 17291556 (+) False G184995
TU250579 lncRNA downstream 536921 17393534 ~ 17397048 (+) True G185022
XM_039781862.1 mRNA upstream 57599 16765545 ~ 16779935 (+) True si:ch211-57i17.1
XM_039781861.1 mRNA upstream 57599 16765545 ~ 16779935 (+) False si:ch211-57i17.1
XM_039781864.1 mRNA upstream 57599 16765545 ~ 16779935 (+) False si:ch211-57i17.1
XM_039781863.1 mRNA upstream 57599 16765545 ~ 16779935 (+) False si:ch211-57i17.1
XM_039781866.1 mRNA upstream 57599 16765545 ~ 16779935 (+) False si:ch211-57i17.1
XM_039781875.1 mRNA downstream 1595 16858208 ~ 16873108 (+) True gnpat2
XM_039782390.1 mRNA downstream 19706 16876319 ~ 16880335 (+) True fam228a
XM_039782392.1 mRNA downstream 19707 16876320 ~ 16880335 (+) False fam228a
XM_039782391.1 mRNA downstream 19708 16876321 ~ 16880335 (+) False fam228a
XM_039782388.1 mRNA downstream 19709 16876322 ~ 16880335 (+) False fam228a
TU250355 other upstream 4220 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 60933 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250012 other upstream 435431 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 869411 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 1121250 15694944 ~ 15716284 (+) False dpf3
TU250543 other downstream 437041 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 485224 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 485224 17341837 ~ 17365977 (+) False map7b
TU250758 other downstream 812559 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 825945 17682558 ~ 17686398 (+) True G185145

Expression Profile