RNA id: XM_039781873.1


Basic Information

Item Value
RNA id XM_039781873.1
length 4501
RNA type mRNA
GC content 0.47
exon number 20
gene id lpin1b
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16837534 ~ 16856613 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATTTGACGCAACCAGTCAACTGTCTGCAACAATGTAAGCAGCTGTAATTGTGTTGCCACTGTGGCAGCTGAAACGATGCTTTTGGCAACTCAACAGCTCTACGCTGATTGGTCAGCGGGGGGGGTTCGATGCAGATGATGTCATCCACTGTCAAGGCTCGCTGAGCTAGACAGAGCGAGAGAAACAGACGGGGCAAAGGGAGAAGTTAGCATCGCGTTgacttaaaataatttttttttgtcgctGAAAGGCGGTGACACCAAGTCAAGGCTTTATCAAACACTCAGATATCACCTCTATCGGGAAATTCCGCTTCTATGATGTGTTGTTAAGCTGCCATTCACCGCTGAGGAAACGCCAGTCTCCGTAAAGGCTGTCTGCATACTCAGCTACTGTATAGAAGACCCTTCAGACCATGAACTACGTGGGCCAGTTGGCGGGCCAGGTGTTTGTCCAGGTCAAAGAGCTGTACCGAGGCCTCAATCCCGCCACCCTTTCTGGCTGCATTGACGTCATCGTAGTGAGACAGCCCGATGGATCCCTGCAGTGCTCACCTTTCCATGTTCGCTTCGGCAAAATGGGAGTCCTCCGCTCCCGAGAGAAAGTGGTGGACATGGAGATCAATGGAGAACCAGTGAATCTCCATATGAAGCTTGGGGACAACGGGGAAGCATTCTTTGTGCAAGAAACAGAAAATGACGAGGAAGTGGTTCCGTCCTACCTGGCCACCTCTCCGATCTTGTCAGATGGAGCCATTCTGATGAGCTCCTCCCTGATGGGGAAATGCTCCGGGCCAACCATACAAACCCTGGGCTCCTCGGGGAGCATGGGAGAGACCGGAAGTGTAGTGacgaagaagaggaggaagaggaggaagaagactcGGGCGGACAGcttgaggagagaggagagtggGGACTACTCCGAGGATGAAGACATGTTCACCATAGACATCAGCTCAGATGAAATGACGACGATGCAGAGCAACAGGACTTCATCTCAGGACGTTTTAAGAGATGAGACAACAGACGGCTCTTTCTACACTCGTTCAGATGGAGAGTGGAGCCCTATTCAGAGCCCTGGAAACTCTCGTCCCACCTCTTCTAAGAGCGACTCTGAACTAATGAGCAAGCCGTCAAACAATCAGAATCCAACCATGCACTGGGCGTGGGGAGAGCTGCCACAGGCTGCCACGCCATCCTTCCTTCCAGTGAAATCCAACCCTCAACCAGTGTGCCCAGTATCCATCCCTTTTTCTGAAAGCACACACTTCCGTGTGATAACTCACGAGGCGTCTTCGGAACAGTGCGGACCCTGCTCAGAAATATCAGCGCTCAGACTGCTGATGCCAGAGGAGACCAGTGAGGAGACAGTTGAGATGGAGTCCGAATCCATGAGGATGGAGACCCAGACAGCCGGAGGTGCGGCAACTTGTATGATGTCTGACACGGAGGAGACAATGTGTCGTCCACCAGGAAAGACAGACTCTCCATCCAAGAGAAAAGACAAGAGAAGCCGCCATCTTGGTGCTGATGGAATTTAcctggatgacatcacagagcTCGAGCCTGAAGTGGCGGCCCTTTATTTCCCTAAGAGTGACGGTGGTGCAGCAGTGAGGAGCATCTCGGACCCGGGCCTCCACAGCAGCAGTCTGTCCCCACAGTCACTCAGCTCTGGAGGGGACAGCGGAGTGGACAGCTACTGCGACCCCTTGGCTGACATGCCGTCTATCGCCATTTCCTTGTGTGGAGGACTCAATGACAACAAGGAGATCACTAAAGAGCAGTTCCATGAGAAGATCATCTCTTACCAGCAGTTTTCGGAAAACCCCTCCATCATCGACGACCCCAACTTAGTTGTGAAAATTGGCTCCAAATACTATAATTGGAGCTCTGCGGCTCCACTTATGCTGGCTATGCAGGCCTTTCAGAAACCGCTGCCAAAGGCTACAGTGGAGAACATCATGAAGGAGAAGATGCCCAAGAAAGGAGGGAGGTGGTGGTTCTCCTGGCGAGGCAGAAACAGCAGCACCAAATCGGATTCCGTCTCTGAGCGTGGGGCCTGTGGCTATGATGAGCAGGCTGGGAAAATGTCAAGCAGACGCAAAGAAGAGTCGTCCTCTAGTGATGAAGACCACAGGGCAGCCAAACAGAGCTCTGCCACCATCCAATCAGAGCCTGGGCTCACACCGGGAGGCGTGACTTATAAGAAAACACTTCGGCTCACATCAGAGCAGCTGctgtCTCTCCAGCTGCAGGATGGTCCTAACGATGTTGTGTTCAGCGTGACCACTCAGTACCAGGGAACCTGTCGCTGTCAGGGCACCATCTACCTCTGGAACTGGGACGACAAGATAATTATCTCTGACATAGATGGAACCATCACCAGGTCGGACACACTGGGTCATATCCTGCCCACACTGGGGAAAGACTGGACCCACCAGGGCATAGCACACCTCTACCACAAAGTCAGCCAAAATGGCTACAAGTTCCTGTACTGCTCAGCTCGAGCTATCGGCATGGCTGACATGACCAGAGGTTACCTACACTGGGTCAACGAAAGAGGCACCATGCTTCCTATAGGCCCCGTCCTTCTCAGCCCGAGCAGCCTCTTTTCAGCTCTGCACagGGAAGTGATCGAGAAGAAACCAGAGAAATTCAAGGTGGAGTGTCTCAACGATATCAAGAACCTCTTCTAccccaacacacagccattcTATGCAGCATTTGGCAACAGACCAACgGATGTATATTCCTATAAAGAAGTAGGAGTGCCTCTAAACAGGATTTTTACAGTAAACCCTAAAGGAGAGCTAGTGCAGGAGCATGCCAAGACCAACATCTCATCTTACGTCCGTTTGGGTGAGGTGGTGGACCATGTGTTTCCTCTGAAGATGCGGGCCTCCTCCTCAGACTTCCCCTGCTCAGACACCTACAGCCACTTCACCTACTGGAGGCAGCAGCTCCCCCGGGTGGAGCATCAGGGCACTACACCTCCACAGTCTCCCCGTCCCAGCAGCTGACTACCCGTGGCCTGCTGAGCGGCTCCTAGCAGGCAGAGCACTGATGGGTGTGATATGAATCTGTAGATGTTTGTAGAacatgtagcactttgagatcacagagagagcgagagagagagagctgctgtGAATACTCTTATAACGCACAAGAGGGATGTAAGCGCACTTTCATGAAAAGACGGCCTCTGTAGCCTTCTGACTAGATGTATGTATTTGAgcaattataataatttattcaGGCAGCTTAGCACATGTATTATTTTTGACATTATTTAGGTAGCTAAAGGTAGCTTTCTAGGCAGACAGTTGCATTCTGCATCTAACAGATGATATGGCTTCTGTTCAGAAGtgcatcacacagacacactgtgcACACATAAGAGAGCAAGTTACTTAAACGTGTGCCAAATACTCAACGTAGAATTTATTTTCGTATTTCGTTTTTTCAGTCCAGACTGTTACAGATCCTGAATCAGCATGGAAATGCAGATATAtacctatatacagtacatacatgcaGACTAATTTGACTTTATAGCAACACGTGTGTGTAATCTAATAttctgtttgaaaaaaaaaacagtattagttacatattacattaaaatgtattacaGAGCACAATGATTGAATGATCATCTATCTATATAGCTTGACATTATCCTGACAGAGGGTGCATTATAAAGACGGTTTGGAATGAATATTTATTGTTGAGACAAAATAATGCTGATagagaacagaaagaaaaacattttcagtgGTCAAAATCAAGAGTATCTGTGAGAGGAACTgctaaatcatttttatttttctattgacATCCACACTGTCTATATGTTGTGATCATTTCTGTTGTGGCCTTCATGAAACGCCTTTTAATTTATCCAGTTCATAAAATAAGTCTATGTGACGTGTTCCACTCTCTAAGATGTATGCTTGTTTCCATAAATGCCATAgagtatattttatttattcatctgaTGACATACTGACTGATATAAAATGTAGCTTACATATACATTAGCCATTGGTTCTTTTACTGTACTTCCATGCCCTAGTAATGTCACTTAAAGCAAAGCCCTCATTGGACTATCCATAGCTTAGAGCAGACAGTAGGCcacagtacacacagacactcgtGAAGTGATCTTTATTTCTTACAATACCACAGATAACCTGaggtcatatacagtatatgtacagGAGCTGCTATCACAGTGACTGTGACCATAACTATATGAACAGTATCATCATATCGAGTAAGCCTGCAGTTTATAAAAGAGGATGTGTGCATATAATGCTTTTTATTCTTTCCATGAAAGAGCTACTAAACATAGCCTGAAAGCGTATTATCTTTGCCTTAACTGTGAACAATATGATCAAGGATTTGTTCATTTATTCCCTCCACCCCTTCTCTTGACCAgttcactgttacatttatGTAATCaaacttattaaaaaaatatgccTTGGTT

Function

GO: NA

KEGG:

id description
K15728 LPIN; phosphatidate phosphatase LPIN

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250341 lncRNA upstream 114640 16724877 ~ 16726392 (+) True G184851
TU250330 lncRNA upstream 154953 16681895 ~ 16686079 (+) True vegfab
TU250247 lncRNA upstream 230652 16595940 ~ 16610380 (+) True G184796
XR_005636882.1 lncRNA upstream 324699 16501866 ~ 16516333 (+) False LOC120546561
TU250222 lncRNA upstream 339145 16495957 ~ 16501887 (+) False LOC120546561
TU250480 lncRNA downstream 77083 16933696 ~ 16956864 (+) True G184948
TU250541 lncRNA downstream 424502 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA downstream 432238 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA downstream 432238 17288851 ~ 17291556 (+) False G184995
TU250579 lncRNA downstream 536921 17393534 ~ 17397048 (+) True G185022
XM_039781862.1 mRNA upstream 61097 16765545 ~ 16779935 (+) True si:ch211-57i17.1
XM_039781875.1 mRNA downstream 1595 16858208 ~ 16873108 (+) True gnpat2
XM_039782390.1 mRNA downstream 19706 16876319 ~ 16880335 (+) True fam228a
XM_039782392.1 mRNA downstream 19707 16876320 ~ 16880335 (+) False fam228a
XM_039782391.1 mRNA downstream 19708 16876321 ~ 16880335 (+) False fam228a
XM_039782388.1 mRNA downstream 19709 16876322 ~ 16880335 (+) False fam228a
TU250355 other upstream 7718 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 64431 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250012 other upstream 438929 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 872909 15914645 ~ 15968123 (+) False LOC120546249
XR_005636866.1 other upstream 1124748 15694944 ~ 15716284 (+) False dpf3
TU250543 other downstream 437041 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 485224 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 485224 17341837 ~ 17365977 (+) False map7b
TU250758 other downstream 812559 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 825945 17682558 ~ 17686398 (+) True G185145

Expression Profile