RNA id: XM_039781875.1


Basic Information

Item Value
RNA id XM_039781875.1
length 2775
RNA type mRNA
GC content 0.50
exon number 16
gene id gnpat2
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16858208 ~ 16873108 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTGGCCCCGTGGGGGTGCTGAGCTCTGCGCAGGCTGTATCGAAGGGAGCTTTAAGTACGGAAAACGAAAGTCGATGAGGACACAGCTATCTGCGAGGGTTTATGTTTGTTTCCGTAAAGAATGACGAACACGTATAGGGATTCAGGCAGAGCAGGGCTGGAAAATGCGGAGGAGTTTGTGGATATGTTGGAGAAAAGGAGGTGCAGCAGTGATCTGGGCCATGCCCTCAGGACGTACAGCCCCAGCCCTTACGAAGGAGCCCTGTCCTGCTCCACGGCTGACCTCAACAAAGCCGTGCTGGAGTCCCAGTATCTACGCTACGTGACCAAGGAGATCGCCACGGAGACGGGGTCATCGGTAGAGGATGTGAGACAGGAGGTTTGTAGAATTTTGGAGGAGATGTCTCAAAATCTGCAGCTGGGGTCCATCAGGCTGATGGCCTACACACTTACCAAGGTGTTAAAGAGACTCTTCACCGGCATCTTTGTCAACATGGAAGGACTCAACATGCTCCAGCAAGCCATTCAGGAGAGTCCTGTGATCCTGATGCCCAATCACAGGAGTTATGTGGACTTCCTGGTTATCTCCTACATCCTGTTCACCTACGACATCCCATTACCTGTTATTGCTGCAGGAATTCCTCTTGCAGGGATGAAGATGGTCGGAGAGATACTGCGTCGCTCGGGGGCTTTCTTTATCCGACGTGCCATTGGCTCTGACAAACTGTACTGGGCAGTGCTGTCAGAATATGTCAAAACCATTGTCAGGaAAGGATTTGCTCCTCTGGAGTTTTATGTGGAAGGCCTGCGGAGTCGCACACTGAAGTCCCAGATACCCAAGTTAGGCATGATGCACATGGTGCTGGAGCCTTACTTTAAAGGCGAGGTGTATGACATCACATTGGTCCCCATCAGTATCAGCTACGACCGAGTGCTGGAGGAGTCGCTGCTCGCCCACGAGTTACTGGGCATCCCCAAACCCAAAGAAAGCACCACAGGTCTGCTGAAGGCTACCAAAGTGTTGCAGGAAGATTACGGCAACATGCATGTGAACTTTGGCCGTCCCATGTCAGTCCGACGTTTGTGTCAGGGCAAGATAAACCGCGGCCAGTACAACCTCATACCTAGAGATCTTCCCCAGAAGCCCAGTGCCGAGACCCAGGCCTGTGTGAGTGGGCTGGCTAATCTGATGGTACGAATCCAAGAGGAGGGCTCTCTGATCAGCCCTTGGTCTCTGATGGCGTGCCTGTTGCTCCAGGCTCCTACCACAGTCTTAACACAGGAGGGCCTGCTGTGGCATCAGCTTACAGAAAAAACCCTCTGGCTCAGGAAGCTGGCGCTAGACTTTGGGGCTCGCCTGAACTGGCCTGgacaAGTCCCTGACCTGGATGTGATGTCCTCCACCGTGACTCTCCATCGATCCGTAGTTCACCTCAAAGCAGGGCGTGTCTACCTGGTTCGGGAGGAAGAGCCCGCGAGGAAACATCCAATCAGCCCAGAGTTGGATGTGATCAGGACGGCGGCGGCGGTGCTGATGCTGGCTTCCTATAGGAATCAGTCTCTGCACGTTTTTGTGCGTCCCGCCATGCTCGCAACGGCCATACGCGTCACAAAGAGCGCACAGAGAGACGAGCTCTTCGCCTTCTTCTGTTTCCTTCGGGACATCTTCTCCAACGAATTCATCTTTATCCCTGGAAAGTCGTCTCAGGACTTTGAGGAGGCATGCTTCCTCCTGAACAAATGTGGAGCAGTCGACATCAGTGAACAGGAAGTGATAGTGTCAGACGCACGGCTGGAGGTGTTATCCTTCCTGCAGGCCCTTCTACAACCCTTCATACACTCTTACCAGGTGATGTTCAGGTACCTCTGTGAAGACGGAGTTAACATGTTCACCGAGAAACAGGTCCTTCCTGCTGTGCGAAACCTGGCTACAAAGCTCATCCTCTCAGGTGAGCTTCACACCTATGAAGCCCTGTCGTCCGACACGCAAAAGAACGTTTTGTCGGCTCTGCAGAGACTGGAGACGGTGACAAAGTTGAGGGAGTCTGAGCAGAATGAATACAGAGTGAACAAAGCAGCTGTCAGAAGAATCGGTGACATACTTTCTGGGGAAATCTCTCCCCAGATGCTCCAGACTACACCTGATGCTAAACTTTAGCCTCCATTGGACGAGATCCATCTTCAGTATCAGCTCACAGTCCTTTTAACGTCAACTTGACCCTTTCCACTTCGTCTTCCCTCCGTGCCTTTATGCAGCTGTTGGGAGAATCGCTGCACCATAACTCAGACAAAATACTTAATGTCCTGGATGCCAGTGGCCAGACTTAACCTGGCGGCGTTCCGCTCTTGAACGTTTGCTACCTCTCTGTGTCCCTGTTCTCATCTCTGACAGGACTGAGATAAAGCTACAAAGACCTGATACAGTGACCCAAGGGCGCCAGTATTGCTGATTTTGTCTGATATGTATAATCAGAATTAGTCGATTAAGGAAGGCGTACGTATGACTGATCCACTAGTGATGCCTGTGGATCAAGATACTGAACTAAACCTGTATTTTAATCAGTTGCAATATGTTAGTACGTGTTTTGTAATGTAGATATATTGCTGATTGACAAGGGTGGCATGTCTAATGAACAATAGAACACTTAAAAGAACTTGATTGCTGGCAAAGTAAGTGCAATTAGATAGTAAACACTGATTCATGACACTTGATTGTACAATGTACCAATAAACCTCTAAATACCATAATAATGTCAAATACCATAACCCATCAA

Function

GO:

id name namespace
GO:0044255 cellular lipid metabolic process biological_process
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
K00649 GNPAT; glyceronephosphate O-acyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250341 lncRNA upstream 131816 16724877 ~ 16726392 (+) True G184851
TU250330 lncRNA upstream 172129 16681895 ~ 16686079 (+) True vegfab
TU250247 lncRNA upstream 247828 16595940 ~ 16610380 (+) True G184796
XR_005636882.1 lncRNA upstream 341875 16501866 ~ 16516333 (+) False LOC120546561
TU250222 lncRNA upstream 356321 16495957 ~ 16501887 (+) False LOC120546561
TU250480 lncRNA downstream 60588 16933696 ~ 16956864 (+) True G184948
TU250541 lncRNA downstream 408007 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA downstream 415743 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA downstream 415743 17288851 ~ 17291556 (+) False G184995
TU250579 lncRNA downstream 520426 17393534 ~ 17397048 (+) True G185022
XM_039781872.1 mRNA upstream 1595 16837534 ~ 16856613 (+) False lpin1b
XM_039781873.1 mRNA upstream 1595 16841032 ~ 16856613 (+) True lpin1b
XM_039781862.1 mRNA upstream 78273 16765545 ~ 16779935 (+) True si:ch211-57i17.1
XM_039782390.1 mRNA downstream 3211 16876319 ~ 16880335 (+) True fam228a
XM_039782392.1 mRNA downstream 3212 16876320 ~ 16880335 (+) False fam228a
XM_039782391.1 mRNA downstream 3213 16876321 ~ 16880335 (+) False fam228a
XM_039782388.1 mRNA downstream 3214 16876322 ~ 16880335 (+) False fam228a
XM_039781403.1 mRNA downstream 92358 16965466 ~ 17134416 (+) True nbas
TU250355 other upstream 24894 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 81607 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250012 other upstream 456105 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 890085 15914645 ~ 15968123 (+) False LOC120546249
XR_005636866.1 other upstream 1141924 15694944 ~ 15716284 (+) False dpf3
TU250543 other downstream 420546 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 468729 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 468729 17341837 ~ 17365977 (+) False map7b
TU250758 other downstream 796064 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 809450 17682558 ~ 17686398 (+) True G185145

Expression Profile