RNA id: XM_039781893.1


Basic Information

Item Value
RNA id XM_039781893.1
length 2214
RNA type mRNA
GC content 0.51
exon number 4
gene id si:ch211-63o20.7
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 9460778 ~ 9470517 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAATGATAATGCACGTACAGTCAGAGCGGGGCGCTCTGAATTTTGTCAAGGAAGTCTGTGGCATTTGTGTTGTTCTGACAATTTAGCTATCTCAGTGGTTGATTAACAATAACTTATCCAAAGTCGTTGAATATGGTGCGAGACGGTTTGTCAATCaagtagctagctagattgcagATTAATTGCTGGTAATGTAAGCTGAAGTCTTGTGGcACTTGCATTAGTCTCCGTTCCCTGTGAGAGATGGAGGAGCTCTACACTTTAGAGAGGGAGGTAGGACGAGGCAGCTATGGTGTTGTCTTTGAGGGCCATATGGCCAAAACAGGACAGAGGGTGGCTATCAAGCGGCTGCCCTGCAGCAACCCGGAGTGCATTGAACTCTACCTGCAAGAGCTGTGGGCCATGAGAGCCACTGCCAAGAACCATGCCAATGTCATTGCACTccacagctgcctgctgcagaCTGGGCCAAGGAGCCTGAAGCCCCTAAAACCAGGGAAACTGCCTCCACGTCTAGTTGAGAGCGTGCTGAAAGGCACTATAGTCGGAGCAGCACAAAGTCAGGAAAGGAATGACGCCCAGCGGGGGACCAACTCTGTCTCAAGACTTCAGGACAGGACCAACACTGTTCAGGCCAAGCACCCACTCCAGTACAAGACTAAATCAAATGCATGTGATTCTACAACCCCACAAAGGCCTCAACACCGAGCCAGGAAGAGACCGGCCCAGACGGAGGAAGAGCAGCCGGGACCCCTGCGTTGCTTGGCCCTGTGGCTTGTGATGGAGTACTGTGATGGGGGCGACTTGAATCAGTATCTGCTCTCCAGGCCGCCCGACTCCCAGCGTAACCACAGCGTGGTGCGACAGCTCTGCAGTGCTCTGGCCTTCCTGCATAGTCTGGGGATCACCCACCGAGACCTGAAGCCTGACAATGTGCTGGTCTGTGTGACACCAAGAGGCCCCGTTGTCAAGGTGGCAGACTTCGGTCTGAGCAAGATGAGTGAAGGTCTGCTGGATGGGGATCTGACCAGGCAGCACTTCTCCTCCACCTGTGGCTCTGACTTCTACATGGCTCCAGAGGTGTGGGGGGGGCTGATCTACTCGGCCCAGGCGGACATCTTCTCCCTGGGCGTGATGTTCTGGGCGGTCCTGGAGAGAATCACCTTTCTGGAGGAAGGGGCCCCGCAAGAACAACTGGGTGCCTACGTGTGCAAGGGTCGCTCCGGCTGGCTGATGCCGCTGGGGGAAGCTTTGTGGGAGAACGCCGACCTCCAGCTGTGTATCCCGATGAAGTTTAAGAGGGCGCCCCCGCTGCCACCCCCGCCCGGCCCAGCCATGTGCGCCCTGCTTTTAGACATGCTCGCCTCAAACCCGGATGCTCGGCCCCCGGCAGACCAGCTGGAGGCCCGAGTGCGCTCTGCTCTGGAGGAGGACTCCCGCTGACCGAGTGCACTTAACAGACCATAATGGCTGTAACCATCCTCCAGCCCGCTACGTGGAAATATTGACAGTGGACCCCCTGACTGCAGCACTCCCTACATGTGTAAGCAATAGCCACTTTGCTGCCACAGGGAAGTGGGGATAGCAAATATGTATGATTATACGGGATTGCAGGTGCTTTTCGTGTCACTGAAACAGAAGCTCATTTTCTAAGCTGCGCAGGAAACCACATGAAGGGAAAATGGAAGGTCCGTACCGCAGACAAAACACGCAATGATATCCAAACAACTCCATATAAAGATCTAGTGGGACTCACTCAAGATGTATTTGATGGAAACGCCATGCTGTTGCTTGGGCCTTGAATGCTTGACATAGAAAATCAATTTTAGCGTGTATGTATGGCTGAAATGAAATGCTAGGGATTACCTGCTGCTACTGTGTTATGGGTCCATTATCTCAGCTTCATGTCGGGTGTTCATTTTGACTTGATTTGCAGACATTGAGCTTTTTAAGTGTTGAAAAATTTAGCTTACGTTGAAGAACTTTATCATCTTACCCAAATCTTTCCACCACACATTGGTGTAGCATAGATGTTACAGTTCACTGGGCTTCCATACGTCTTAAATATGTAAAGTGAGTGATCATACATAAACATTTGTAATATGTacagtagttttttttgttttttgttttgttgtgacaCTTTTCAAGTCTTAATTGTTGTTAATACTCTGTCATCAGCAGGTGTCAATAAAACGCCATGGTGATTCTCA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248155 lncRNA downstream 132255 9327400 ~ 9328523 (-) True G183213
TU248156 lncRNA downstream 133490 9325247 ~ 9327288 (-) True G183214
TU248131 lncRNA downstream 226980 9233511 ~ 9233798 (-) True G183189
TU248122 lncRNA downstream 312678 9147089 ~ 9148100 (-) True G183180
TU248120 lncRNA downstream 325970 9134545 ~ 9134808 (-) True G183178
TU248217 lncRNA upstream 22664 9493179 ~ 9493404 (-) True G183256
TU248219 lncRNA upstream 31397 9501912 ~ 9505372 (-) True G183258
TU248225 lncRNA upstream 62031 9532546 ~ 9543226 (-) False G183263
TU248226 lncRNA upstream 62031 9532546 ~ 9543226 (-) False G183263
TU248227 lncRNA upstream 62031 9532546 ~ 9543226 (-) True G183263
XM_039782695.1 mRNA downstream 58013 9330484 ~ 9402765 (-) True LOC120547212
XM_039781916.1 mRNA downstream 172575 9155024 ~ 9288203 (-) False disp1
XM_039781915.1 mRNA downstream 172801 9155024 ~ 9287977 (-) False disp1
XM_039781917.1 mRNA downstream 261493 9155024 ~ 9199285 (-) True disp1
XM_039781918.1 mRNA downstream 261979 9155024 ~ 9198799 (-) False disp1
XM_039781901.1 mRNA upstream 34917 9505432 ~ 9527428 (-) False znf395b
XM_039781899.1 mRNA upstream 34917 9505432 ~ 9527428 (-) True znf395b
XM_039782254.1 mRNA upstream 79489 9550004 ~ 9556929 (-) False paqr8
XM_039782253.1 mRNA upstream 79489 9550004 ~ 9556929 (-) True paqr8
XM_039782710.1 mRNA upstream 132973 9603488 ~ 9622711 (-) True stmn4
TU248116 other downstream 327306 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 673561 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 1435734 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 1694392 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 2427376 7033330 ~ 7033402 (-) True trnak-uuu_21
TU248390 other upstream 629088 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 1031405 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 1050202 10520717 ~ 10521410 (-) True G183528
TU248695 other upstream 1903593 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 3112654 12583169 ~ 12583241 (-) True trnat-ugu_2

Expression Profile